Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00515

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00510 and ABZR87_RS00515 are separated by 9 nucleotidesABZR87_RS00515 and ABZR87_RS00520 are separated by 34 nucleotides ABZR87_RS00510: ABZR87_RS00510 - MFS transporter, at 104,783 to 106,339 _RS00510 ABZR87_RS00515: ABZR87_RS00515 - DoxX family protein, at 106,349 to 106,759 _RS00515 ABZR87_RS00520: ABZR87_RS00520 - LysR family transcriptional regulator, at 106,794 to 107,678 _RS00520 Position (kb) 106 107Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 105.521 kb on + strand, within ABZR87_RS00510at 105.571 kb on + strand, within ABZR87_RS00510at 105.686 kb on + strand, within ABZR87_RS00510at 105.686 kb on + strand, within ABZR87_RS00510at 105.686 kb on + strand, within ABZR87_RS00510at 105.687 kb on - strand, within ABZR87_RS00510at 105.687 kb on - strand, within ABZR87_RS00510at 105.689 kb on + strand, within ABZR87_RS00510at 105.689 kb on + strand, within ABZR87_RS00510at 105.689 kb on + strand, within ABZR87_RS00510at 105.689 kb on + strand, within ABZR87_RS00510at 105.690 kb on - strand, within ABZR87_RS00510at 105.690 kb on - strand, within ABZR87_RS00510at 105.690 kb on - strand, within ABZR87_RS00510at 105.704 kb on + strand, within ABZR87_RS00510at 105.713 kb on + strand, within ABZR87_RS00510at 105.714 kb on - strand, within ABZR87_RS00510at 105.714 kb on - strand, within ABZR87_RS00510at 105.714 kb on - strand, within ABZR87_RS00510at 105.714 kb on - strand, within ABZR87_RS00510at 105.751 kb on + strand, within ABZR87_RS00510at 105.881 kb on + strand, within ABZR87_RS00510at 105.882 kb on - strand, within ABZR87_RS00510at 105.882 kb on - strand, within ABZR87_RS00510at 105.882 kb on - strand, within ABZR87_RS00510at 105.882 kb on - strand, within ABZR87_RS00510at 105.882 kb on - strand, within ABZR87_RS00510at 105.935 kb on + strand, within ABZR87_RS00510at 105.935 kb on + strand, within ABZR87_RS00510at 106.010 kb on + strand, within ABZR87_RS00510at 106.010 kb on + strand, within ABZR87_RS00510at 106.010 kb on + strand, within ABZR87_RS00510at 106.010 kb on + strand, within ABZR87_RS00510at 106.011 kb on - strand, within ABZR87_RS00510at 106.011 kb on - strand, within ABZR87_RS00510at 106.011 kb on - strand, within ABZR87_RS00510at 106.011 kb on - strand, within ABZR87_RS00510at 106.011 kb on - strand, within ABZR87_RS00510at 106.314 kb on + strandat 106.315 kb on - strandat 106.351 kb on - strandat 106.361 kb on + strandat 106.362 kb on - strandat 106.368 kb on + strandat 106.368 kb on + strandat 106.368 kb on + strandat 106.368 kb on + strandat 106.428 kb on + strand, within ABZR87_RS00515at 106.428 kb on + strand, within ABZR87_RS00515at 106.428 kb on + strand, within ABZR87_RS00515at 106.429 kb on - strand, within ABZR87_RS00515at 106.429 kb on - strand, within ABZR87_RS00515at 106.429 kb on - strand, within ABZR87_RS00515at 106.429 kb on - strand, within ABZR87_RS00515at 106.468 kb on + strand, within ABZR87_RS00515at 106.469 kb on - strand, within ABZR87_RS00515at 106.476 kb on + strand, within ABZR87_RS00515at 106.477 kb on - strand, within ABZR87_RS00515at 106.477 kb on - strand, within ABZR87_RS00515at 106.627 kb on + strand, within ABZR87_RS00515at 106.627 kb on + strand, within ABZR87_RS00515at 106.627 kb on + strand, within ABZR87_RS00515at 106.627 kb on + strand, within ABZR87_RS00515at 106.628 kb on - strand, within ABZR87_RS00515at 106.628 kb on - strand, within ABZR87_RS00515at 106.628 kb on - strand, within ABZR87_RS00515at 106.628 kb on - strand, within ABZR87_RS00515at 106.638 kb on + strand, within ABZR87_RS00515at 106.639 kb on - strand, within ABZR87_RS00515at 106.796 kb on - strandat 107.159 kb on + strand, within ABZR87_RS00520at 107.194 kb on + strand, within ABZR87_RS00520at 107.194 kb on + strand, within ABZR87_RS00520at 107.194 kb on + strand, within ABZR87_RS00520at 107.194 kb on + strand, within ABZR87_RS00520at 107.194 kb on + strand, within ABZR87_RS00520at 107.195 kb on - strand, within ABZR87_RS00520at 107.452 kb on + strand, within ABZR87_RS00520at 107.453 kb on - strand, within ABZR87_RS00520at 107.453 kb on - strand, within ABZR87_RS00520at 107.672 kb on + strandat 107.672 kb on + strandat 107.672 kb on + strandat 107.672 kb on + strandat 107.673 kb on - strandat 107.673 kb on - strandat 107.673 kb on - strandat 107.673 kb on - strandat 107.673 kb on - strandat 107.673 kb on - strandat 107.740 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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105,521 + ABZR87_RS00510 0.47 -0.4
105,571 + ABZR87_RS00510 0.51 -1.2
105,686 + ABZR87_RS00510 0.58 -0.8
105,686 + ABZR87_RS00510 0.58 +1.1
105,686 + ABZR87_RS00510 0.58 +0.1
105,687 - ABZR87_RS00510 0.58 -0.1
105,687 - ABZR87_RS00510 0.58 +0.1
105,689 + ABZR87_RS00510 0.58 +0.9
105,689 + ABZR87_RS00510 0.58 +0.0
105,689 + ABZR87_RS00510 0.58 -1.0
105,689 + ABZR87_RS00510 0.58 -1.0
105,690 - ABZR87_RS00510 0.58 -0.1
105,690 - ABZR87_RS00510 0.58 -1.2
105,690 - ABZR87_RS00510 0.58 -0.3
105,704 + ABZR87_RS00510 0.59 +2.2
105,713 + ABZR87_RS00510 0.60 +0.0
105,714 - ABZR87_RS00510 0.60 -2.3
105,714 - ABZR87_RS00510 0.60 +0.9
105,714 - ABZR87_RS00510 0.60 +0.7
105,714 - ABZR87_RS00510 0.60 -1.0
105,751 + ABZR87_RS00510 0.62 +0.1
105,881 + ABZR87_RS00510 0.71 -1.6
105,882 - ABZR87_RS00510 0.71 -0.9
105,882 - ABZR87_RS00510 0.71 -2.6
105,882 - ABZR87_RS00510 0.71 -0.3
105,882 - ABZR87_RS00510 0.71 +0.2
105,882 - ABZR87_RS00510 0.71 +0.8
105,935 + ABZR87_RS00510 0.74 +0.2
105,935 + ABZR87_RS00510 0.74 +0.1
106,010 + ABZR87_RS00510 0.79 -1.0
106,010 + ABZR87_RS00510 0.79 +0.1
106,010 + ABZR87_RS00510 0.79 +1.8
106,010 + ABZR87_RS00510 0.79 +1.2
106,011 - ABZR87_RS00510 0.79 -1.7
106,011 - ABZR87_RS00510 0.79 -0.5
106,011 - ABZR87_RS00510 0.79 -0.3
106,011 - ABZR87_RS00510 0.79 -0.6
106,011 - ABZR87_RS00510 0.79 -2.1
106,314 + +0.2
106,315 - -0.4
106,351 - -2.2
106,361 + -1.7
106,362 - -0.1
106,368 + +0.4
106,368 + -0.1
106,368 + -0.1
106,368 + -0.6
106,428 + ABZR87_RS00515 0.19 +1.1
106,428 + ABZR87_RS00515 0.19 -0.2
106,428 + ABZR87_RS00515 0.19 -0.2
106,429 - ABZR87_RS00515 0.19 +0.4
106,429 - ABZR87_RS00515 0.19 -1.4
106,429 - ABZR87_RS00515 0.19 +0.6
106,429 - ABZR87_RS00515 0.19 +1.3
106,468 + ABZR87_RS00515 0.29 +0.2
106,469 - ABZR87_RS00515 0.29 +0.8
106,476 + ABZR87_RS00515 0.31 -2.2
106,477 - ABZR87_RS00515 0.31 -2.2
106,477 - ABZR87_RS00515 0.31 -2.6
106,627 + ABZR87_RS00515 0.68 -1.4
106,627 + ABZR87_RS00515 0.68 -0.6
106,627 + ABZR87_RS00515 0.68 -0.4
106,627 + ABZR87_RS00515 0.68 -0.3
106,628 - ABZR87_RS00515 0.68 +0.3
106,628 - ABZR87_RS00515 0.68 -0.4
106,628 - ABZR87_RS00515 0.68 -0.3
106,628 - ABZR87_RS00515 0.68 +0.6
106,638 + ABZR87_RS00515 0.70 +0.3
106,639 - ABZR87_RS00515 0.71 -1.3
106,796 - -1.7
107,159 + ABZR87_RS00520 0.41 -0.0
107,194 + ABZR87_RS00520 0.45 -0.8
107,194 + ABZR87_RS00520 0.45 -0.5
107,194 + ABZR87_RS00520 0.45 +0.4
107,194 + ABZR87_RS00520 0.45 +2.0
107,194 + ABZR87_RS00520 0.45 -1.7
107,195 - ABZR87_RS00520 0.45 +2.7
107,452 + ABZR87_RS00520 0.74 +2.1
107,453 - ABZR87_RS00520 0.74 -1.4
107,453 - ABZR87_RS00520 0.74 -0.2
107,672 + +0.7
107,672 + +2.2
107,672 + -0.6
107,672 + +0.9
107,673 - +0.6
107,673 - +0.4
107,673 - +1.3
107,673 - +0.5
107,673 - -0.6
107,673 - +6.0
107,740 + +0.6

Or see this region's nucleotide sequence