Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00365 and ABZR87_RS00370 are separated by 25 nucleotides ABZR87_RS00370 and ABZR87_RS00375 overlap by 4 nucleotides ABZR87_RS00375 and ABZR87_RS00380 overlap by 4 nucleotides
ABZR87_RS00365: ABZR87_RS00365 - mechanosensitive ion channel domain-containing protein, at 74,125 to 75,501
_RS00365
ABZR87_RS00370: ABZR87_RS00370 - phospholipase D family protein, at 75,527 to 76,096
_RS00370
ABZR87_RS00375: ABZR87_RS00375 - RsmB/NOP family class I SAM-dependent RNA methyltransferase, at 76,093 to 77,487
_RS00375
ABZR87_RS00380: ABZR87_RS00380 - phosphoribosylglycinamide formyltransferase, at 77,484 to 78,134
_RS00380
Position (kb) 76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 75.146 kb on + strand, within ABZR87_RS00365 at 75.147 kb on - strand, within ABZR87_RS00365 at 75.147 kb on - strand, within ABZR87_RS00365 at 75.147 kb on - strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.158 kb on + strand, within ABZR87_RS00365 at 75.159 kb on - strand, within ABZR87_RS00365 at 75.159 kb on - strand, within ABZR87_RS00365 at 75.233 kb on + strand, within ABZR87_RS00365 at 75.233 kb on + strand, within ABZR87_RS00365 at 75.234 kb on - strand, within ABZR87_RS00365 at 75.234 kb on - strand, within ABZR87_RS00365 at 75.501 kb on + strand at 75.501 kb on + strand at 75.502 kb on - strand at 75.502 kb on - strand at 75.529 kb on - strand at 75.582 kb on + strand at 75.583 kb on - strand at 75.583 kb on - strand at 75.620 kb on + strand, within ABZR87_RS00370 at 75.620 kb on + strand, within ABZR87_RS00370 at 75.620 kb on + strand, within ABZR87_RS00370 at 75.621 kb on - strand, within ABZR87_RS00370 at 75.621 kb on - strand, within ABZR87_RS00370 at 75.621 kb on - strand, within ABZR87_RS00370 at 75.735 kb on + strand, within ABZR87_RS00370 at 75.736 kb on - strand, within ABZR87_RS00370 at 75.736 kb on - strand, within ABZR87_RS00370 at 75.736 kb on - strand, within ABZR87_RS00370 at 75.874 kb on + strand, within ABZR87_RS00370 at 75.875 kb on - strand, within ABZR87_RS00370 at 75.897 kb on + strand, within ABZR87_RS00370 at 75.897 kb on + strand, within ABZR87_RS00370 at 75.898 kb on - strand, within ABZR87_RS00370 at 75.898 kb on - strand, within ABZR87_RS00370 at 76.151 kb on + strand at 76.151 kb on + strand at 76.163 kb on + strand at 76.164 kb on - strand at 76.298 kb on + strand, within ABZR87_RS00375 at 76.299 kb on - strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.598 kb on + strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.599 kb on - strand, within ABZR87_RS00375 at 76.603 kb on - strand, within ABZR87_RS00375 at 77.258 kb on + strand, within ABZR87_RS00375 at 77.258 kb on + strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.259 kb on - strand, within ABZR87_RS00375 at 77.619 kb on + strand, within ABZR87_RS00380 at 78.145 kb on + strand at 78.146 kb on - strand at 78.325 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.326 kb on + strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.327 kb on - strand at 78.425 kb on - strand at 78.453 kb on + strand at 78.454 kb on - strand at 78.454 kb on - strand at 78.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 75,146 + ABZR87_RS00365 0.74 +0.8 75,147 - ABZR87_RS00365 0.74 +0.4 75,147 - ABZR87_RS00365 0.74 +0.4 75,147 - ABZR87_RS00365 0.74 +0.4 75,158 + ABZR87_RS00365 0.75 -0.3 75,158 + ABZR87_RS00365 0.75 +0.3 75,158 + ABZR87_RS00365 0.75 -0.5 75,158 + ABZR87_RS00365 0.75 +1.1 75,159 - ABZR87_RS00365 0.75 -0.4 75,159 - ABZR87_RS00365 0.75 +3.0 75,233 + ABZR87_RS00365 0.80 +0.5 75,233 + ABZR87_RS00365 0.80 -0.3 75,234 - ABZR87_RS00365 0.81 -0.4 75,234 - ABZR87_RS00365 0.81 +0.3 75,501 + +0.4 75,501 + +0.2 75,502 - -1.7 75,502 - +1.0 75,529 - -0.1 75,582 + +0.6 75,583 - +0.2 75,583 - +1.1 75,620 + ABZR87_RS00370 0.16 -1.3 75,620 + ABZR87_RS00370 0.16 +0.2 75,620 + ABZR87_RS00370 0.16 +0.6 75,621 - ABZR87_RS00370 0.16 +0.1 75,621 - ABZR87_RS00370 0.16 -1.9 75,621 - ABZR87_RS00370 0.16 -0.7 75,735 + ABZR87_RS00370 0.36 -1.0 75,736 - ABZR87_RS00370 0.37 +1.1 75,736 - ABZR87_RS00370 0.37 +0.7 75,736 - ABZR87_RS00370 0.37 +1.6 75,874 + ABZR87_RS00370 0.61 -0.2 75,875 - ABZR87_RS00370 0.61 -0.5 75,897 + ABZR87_RS00370 0.65 +0.6 75,897 + ABZR87_RS00370 0.65 -0.1 75,898 - ABZR87_RS00370 0.65 +0.9 75,898 - ABZR87_RS00370 0.65 +0.6 76,151 + +0.7 76,151 + -1.0 76,163 + -0.9 76,164 - -1.2 76,298 + ABZR87_RS00375 0.15 -3.1 76,299 - ABZR87_RS00375 0.15 +0.6 76,598 + ABZR87_RS00375 0.36 +0.3 76,598 + ABZR87_RS00375 0.36 -0.5 76,598 + ABZR87_RS00375 0.36 -0.3 76,599 - ABZR87_RS00375 0.36 -1.1 76,599 - ABZR87_RS00375 0.36 -0.1 76,599 - ABZR87_RS00375 0.36 -0.2 76,599 - ABZR87_RS00375 0.36 +1.2 76,599 - ABZR87_RS00375 0.36 -0.1 76,599 - ABZR87_RS00375 0.36 +0.4 76,603 - ABZR87_RS00375 0.37 +0.1 77,258 + ABZR87_RS00375 0.84 +3.5 77,258 + ABZR87_RS00375 0.84 -0.7 77,259 - ABZR87_RS00375 0.84 +1.8 77,259 - ABZR87_RS00375 0.84 +0.1 77,259 - ABZR87_RS00375 0.84 +0.7 77,259 - ABZR87_RS00375 0.84 -2.8 77,619 + ABZR87_RS00380 0.21 +0.4 78,145 + -1.6 78,146 - -0.2 78,325 + +0.2 78,326 + -1.0 78,326 + -0.5 78,326 + +0.8 78,326 + -0.4 78,326 + -1.6 78,326 + +3.8 78,326 + +0.6 78,326 + -1.6 78,326 + -0.0 78,326 + -0.5 78,326 + -2.1 78,326 + -0.8 78,326 + +1.2 78,327 - +1.2 78,327 - +2.1 78,327 - +1.0 78,327 - +2.3 78,327 - +1.6 78,327 - -1.8 78,327 - +1.4 78,425 - +2.6 78,453 + +3.0 78,454 - +1.2 78,454 - +2.2 78,454 - +1.8
Or see this region's nucleotide sequence