Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00305 and ABZR87_RS00310 are separated by 13 nucleotides ABZR87_RS00310 and ABZR87_RS00315 are separated by 210 nucleotides
ABZR87_RS00305: ABZR87_RS00305 - ABC transporter ATP-binding protein, at 61,729 to 62,856
_RS00305
ABZR87_RS00310: ABZR87_RS00310 - branched-chain amino acid ABC transporter permease, at 62,870 to 63,805
_RS00310
ABZR87_RS00315: ABZR87_RS00315 - branched-chain amino acid ABC transporter substrate-binding protein, at 64,016 to 65,224
_RS00315
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 61.974 kb on + strand, within ABZR87_RS00305 at 61.975 kb on - strand, within ABZR87_RS00305 at 61.984 kb on - strand, within ABZR87_RS00305 at 62.012 kb on + strand, within ABZR87_RS00305 at 62.013 kb on - strand, within ABZR87_RS00305 at 62.261 kb on + strand, within ABZR87_RS00305 at 62.262 kb on - strand, within ABZR87_RS00305 at 62.262 kb on - strand, within ABZR87_RS00305 at 62.262 kb on - strand, within ABZR87_RS00305 at 62.262 kb on - strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.264 kb on + strand, within ABZR87_RS00305 at 62.265 kb on - strand, within ABZR87_RS00305 at 62.265 kb on - strand, within ABZR87_RS00305 at 62.265 kb on - strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.267 kb on + strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.268 kb on - strand, within ABZR87_RS00305 at 62.273 kb on + strand, within ABZR87_RS00305 at 62.273 kb on + strand, within ABZR87_RS00305 at 62.273 kb on + strand, within ABZR87_RS00305 at 62.274 kb on - strand, within ABZR87_RS00305 at 62.274 kb on - strand, within ABZR87_RS00305 at 62.453 kb on + strand, within ABZR87_RS00305 at 62.453 kb on + strand, within ABZR87_RS00305 at 62.454 kb on - strand, within ABZR87_RS00305 at 62.454 kb on - strand, within ABZR87_RS00305 at 62.627 kb on + strand, within ABZR87_RS00305 at 62.627 kb on + strand, within ABZR87_RS00305 at 62.627 kb on + strand, within ABZR87_RS00305 at 62.627 kb on + strand, within ABZR87_RS00305 at 62.627 kb on + strand, within ABZR87_RS00305 at 62.628 kb on - strand, within ABZR87_RS00305 at 62.628 kb on - strand, within ABZR87_RS00305 at 62.628 kb on - strand, within ABZR87_RS00305 at 62.628 kb on - strand, within ABZR87_RS00305 at 62.643 kb on - strand, within ABZR87_RS00305 at 62.643 kb on - strand, within ABZR87_RS00305 at 62.643 kb on - strand, within ABZR87_RS00305 at 62.654 kb on + strand, within ABZR87_RS00305 at 62.655 kb on - strand, within ABZR87_RS00305 at 62.655 kb on - strand, within ABZR87_RS00305 at 62.717 kb on + strand, within ABZR87_RS00305 at 62.718 kb on - strand, within ABZR87_RS00305 at 62.718 kb on - strand, within ABZR87_RS00305 at 62.718 kb on - strand, within ABZR87_RS00305 at 62.718 kb on - strand, within ABZR87_RS00305 at 62.751 kb on - strand at 62.751 kb on - strand at 62.751 kb on - strand at 62.810 kb on + strand at 62.811 kb on - strand at 62.811 kb on - strand at 62.871 kb on + strand at 62.998 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.123 kb on + strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.124 kb on - strand, within ABZR87_RS00310 at 63.141 kb on + strand, within ABZR87_RS00310 at 63.142 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.550 kb on - strand, within ABZR87_RS00310 at 63.627 kb on + strand, within ABZR87_RS00310 at 63.716 kb on - strand at 63.716 kb on - strand at 63.716 kb on - strand at 63.720 kb on + strand at 63.720 kb on + strand at 63.720 kb on + strand at 63.721 kb on - strand at 63.721 kb on - strand at 63.732 kb on + strand at 63.754 kb on - strand at 63.794 kb on - strand at 63.794 kb on - strand at 63.798 kb on - strand at 63.799 kb on + strand at 63.800 kb on - strand at 63.800 kb on - strand at 63.800 kb on - strand at 63.800 kb on - strand at 63.802 kb on - strand at 63.821 kb on + strand at 63.822 kb on - strand at 63.822 kb on - strand at 63.838 kb on + strand at 63.838 kb on + strand at 63.839 kb on - strand at 63.866 kb on + strand at 63.866 kb on + strand at 63.866 kb on + strand at 63.867 kb on - strand at 63.886 kb on + strand at 63.887 kb on - strand at 63.887 kb on - strand at 63.943 kb on + strand at 63.944 kb on - strand at 63.957 kb on - strand at 63.959 kb on - strand at 64.005 kb on + strand at 64.017 kb on + strand at 64.017 kb on + strand at 64.017 kb on + strand at 64.017 kb on + strand at 64.017 kb on + strand at 64.017 kb on + strand at 64.018 kb on - strand at 64.018 kb on - strand at 64.059 kb on + strand at 64.059 kb on + strand at 64.059 kb on + strand at 64.059 kb on + strand at 64.059 kb on + strand at 64.060 kb on - strand at 64.065 kb on + strand at 64.065 kb on + strand at 64.065 kb on + strand at 64.065 kb on + strand at 64.066 kb on - strand at 64.066 kb on - strand at 64.066 kb on - strand at 64.066 kb on - strand at 64.134 kb on + strand at 64.134 kb on + strand at 64.134 kb on + strand at 64.135 kb on - strand at 64.135 kb on - strand at 64.135 kb on - strand at 64.224 kb on + strand, within ABZR87_RS00315 at 64.224 kb on + strand, within ABZR87_RS00315 at 64.224 kb on + strand, within ABZR87_RS00315 at 64.224 kb on + strand, within ABZR87_RS00315 at 64.225 kb on - strand, within ABZR87_RS00315 at 64.239 kb on + strand, within ABZR87_RS00315 at 64.239 kb on + strand, within ABZR87_RS00315 at 64.239 kb on + strand, within ABZR87_RS00315 at 64.239 kb on + strand, within ABZR87_RS00315 at 64.240 kb on - strand, within ABZR87_RS00315 at 64.240 kb on - strand, within ABZR87_RS00315 at 64.240 kb on - strand, within ABZR87_RS00315 at 64.240 kb on - strand, within ABZR87_RS00315 at 64.272 kb on + strand, within ABZR87_RS00315 at 64.273 kb on - strand, within ABZR87_RS00315 at 64.381 kb on + strand, within ABZR87_RS00315 at 64.381 kb on + strand, within ABZR87_RS00315 at 64.382 kb on - strand, within ABZR87_RS00315 at 64.473 kb on + strand, within ABZR87_RS00315 at 64.473 kb on + strand, within ABZR87_RS00315 at 64.473 kb on + strand, within ABZR87_RS00315 at 64.473 kb on + strand, within ABZR87_RS00315 at 64.473 kb on + strand, within ABZR87_RS00315 at 64.474 kb on - strand, within ABZR87_RS00315 at 64.474 kb on - strand, within ABZR87_RS00315 at 64.474 kb on - strand, within ABZR87_RS00315 at 64.474 kb on - strand, within ABZR87_RS00315 at 64.474 kb on - strand, within ABZR87_RS00315 at 64.678 kb on - strand, within ABZR87_RS00315 at 64.678 kb on - strand, within ABZR87_RS00315 at 64.678 kb on - strand, within ABZR87_RS00315 at 64.726 kb on - strand, within ABZR87_RS00315 at 64.726 kb on - strand, within ABZR87_RS00315 at 64.752 kb on + strand, within ABZR87_RS00315 at 64.753 kb on - strand, within ABZR87_RS00315 at 64.803 kb on + strand, within ABZR87_RS00315 at 64.803 kb on + strand, within ABZR87_RS00315 at 64.803 kb on + strand, within ABZR87_RS00315 at 64.804 kb on - strand, within ABZR87_RS00315 at 64.804 kb on - strand, within ABZR87_RS00315
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 61,974 + ABZR87_RS00305 0.22 -1.0 61,975 - ABZR87_RS00305 0.22 -0.0 61,984 - ABZR87_RS00305 0.23 -1.8 62,012 + ABZR87_RS00305 0.25 -0.4 62,013 - ABZR87_RS00305 0.25 -2.2 62,261 + ABZR87_RS00305 0.47 -1.7 62,262 - ABZR87_RS00305 0.47 +0.8 62,262 - ABZR87_RS00305 0.47 +0.2 62,262 - ABZR87_RS00305 0.47 -0.0 62,262 - ABZR87_RS00305 0.47 +0.9 62,264 + ABZR87_RS00305 0.47 -0.3 62,264 + ABZR87_RS00305 0.47 +0.4 62,264 + ABZR87_RS00305 0.47 +1.7 62,264 + ABZR87_RS00305 0.47 +0.7 62,264 + ABZR87_RS00305 0.47 -0.5 62,264 + ABZR87_RS00305 0.47 -0.9 62,264 + ABZR87_RS00305 0.47 -1.2 62,265 - ABZR87_RS00305 0.48 -0.8 62,265 - ABZR87_RS00305 0.48 -0.8 62,265 - ABZR87_RS00305 0.48 -2.3 62,267 + ABZR87_RS00305 0.48 -0.4 62,267 + ABZR87_RS00305 0.48 -1.7 62,267 + ABZR87_RS00305 0.48 +1.2 62,267 + ABZR87_RS00305 0.48 -1.5 62,267 + ABZR87_RS00305 0.48 -1.9 62,267 + ABZR87_RS00305 0.48 -2.2 62,267 + ABZR87_RS00305 0.48 -0.6 62,267 + ABZR87_RS00305 0.48 +0.3 62,267 + ABZR87_RS00305 0.48 -1.7 62,268 - ABZR87_RS00305 0.48 -0.2 62,268 - ABZR87_RS00305 0.48 -0.4 62,268 - ABZR87_RS00305 0.48 -1.6 62,268 - ABZR87_RS00305 0.48 +3.2 62,268 - ABZR87_RS00305 0.48 -1.7 62,268 - ABZR87_RS00305 0.48 +1.5 62,268 - ABZR87_RS00305 0.48 +0.1 62,268 - ABZR87_RS00305 0.48 -1.0 62,268 - ABZR87_RS00305 0.48 -0.8 62,268 - ABZR87_RS00305 0.48 +3.0 62,268 - ABZR87_RS00305 0.48 -1.3 62,268 - ABZR87_RS00305 0.48 -1.1 62,273 + ABZR87_RS00305 0.48 +0.1 62,273 + ABZR87_RS00305 0.48 -0.6 62,273 + ABZR87_RS00305 0.48 -2.2 62,274 - ABZR87_RS00305 0.48 -0.1 62,274 - ABZR87_RS00305 0.48 -1.4 62,453 + ABZR87_RS00305 0.64 -0.4 62,453 + ABZR87_RS00305 0.64 -2.7 62,454 - ABZR87_RS00305 0.64 -0.1 62,454 - ABZR87_RS00305 0.64 -1.4 62,627 + ABZR87_RS00305 0.80 -3.2 62,627 + ABZR87_RS00305 0.80 -1.3 62,627 + ABZR87_RS00305 0.80 -3.5 62,627 + ABZR87_RS00305 0.80 -0.2 62,627 + ABZR87_RS00305 0.80 -1.1 62,628 - ABZR87_RS00305 0.80 -3.3 62,628 - ABZR87_RS00305 0.80 +0.2 62,628 - ABZR87_RS00305 0.80 -1.0 62,628 - ABZR87_RS00305 0.80 -2.8 62,643 - ABZR87_RS00305 0.81 +1.0 62,643 - ABZR87_RS00305 0.81 -0.9 62,643 - ABZR87_RS00305 0.81 -0.7 62,654 + ABZR87_RS00305 0.82 -0.8 62,655 - ABZR87_RS00305 0.82 -1.7 62,655 - ABZR87_RS00305 0.82 +1.0 62,717 + ABZR87_RS00305 0.88 +1.0 62,718 - ABZR87_RS00305 0.88 -0.5 62,718 - ABZR87_RS00305 0.88 +0.7 62,718 - ABZR87_RS00305 0.88 -2.5 62,718 - ABZR87_RS00305 0.88 -1.8 62,751 - +0.5 62,751 - -0.3 62,751 - -1.8 62,810 + -2.9 62,811 - -1.0 62,811 - -0.2 62,871 + +1.3 62,998 + ABZR87_RS00310 0.14 -0.5 63,123 + ABZR87_RS00310 0.27 -0.2 63,123 + ABZR87_RS00310 0.27 +2.5 63,123 + ABZR87_RS00310 0.27 -2.1 63,123 + ABZR87_RS00310 0.27 +0.7 63,123 + ABZR87_RS00310 0.27 +0.4 63,123 + ABZR87_RS00310 0.27 -2.6 63,123 + ABZR87_RS00310 0.27 -0.6 63,123 + ABZR87_RS00310 0.27 +2.4 63,123 + ABZR87_RS00310 0.27 +3.0 63,123 + ABZR87_RS00310 0.27 +0.5 63,124 - ABZR87_RS00310 0.27 -1.5 63,124 - ABZR87_RS00310 0.27 -1.1 63,124 - ABZR87_RS00310 0.27 -0.9 63,124 - ABZR87_RS00310 0.27 +1.3 63,141 + ABZR87_RS00310 0.29 +1.2 63,142 - ABZR87_RS00310 0.29 -1.0 63,550 - ABZR87_RS00310 0.73 -0.5 63,550 - ABZR87_RS00310 0.73 +0.5 63,550 - ABZR87_RS00310 0.73 -2.6 63,550 - ABZR87_RS00310 0.73 +3.3 63,550 - ABZR87_RS00310 0.73 -0.3 63,627 + ABZR87_RS00310 0.81 -1.7 63,716 - +1.5 63,716 - -1.7 63,716 - -1.3 63,720 + -0.0 63,720 + -0.4 63,720 + -1.6 63,721 - -2.6 63,721 - +1.4 63,732 + -1.4 63,754 - -1.8 63,794 - +0.9 63,794 - -1.9 63,798 - -2.8 63,799 + -1.2 63,800 - +0.6 63,800 - -1.4 63,800 - -0.9 63,800 - -1.6 63,802 - -1.4 63,821 + -0.4 63,822 - -0.9 63,822 - -0.1 63,838 + +2.2 63,838 + +0.2 63,839 - +0.0 63,866 + -2.2 63,866 + -1.4 63,866 + +0.4 63,867 - -1.2 63,886 + -0.8 63,887 - +0.9 63,887 - -0.6 63,943 + -1.3 63,944 - +0.8 63,957 - +0.0 63,959 - -0.1 64,005 + +0.6 64,017 + +1.5 64,017 + +0.0 64,017 + +0.5 64,017 + +2.0 64,017 + +0.5 64,017 + -0.4 64,018 - -0.6 64,018 - +0.1 64,059 + -2.9 64,059 + -0.0 64,059 + -0.5 64,059 + -0.4 64,059 + +1.1 64,060 - -0.7 64,065 + -1.3 64,065 + -1.0 64,065 + +0.3 64,065 + +0.3 64,066 - +0.4 64,066 - -0.0 64,066 - -1.1 64,066 - -1.0 64,134 + -1.7 64,134 + +0.4 64,134 + -1.3 64,135 - -2.9 64,135 - +0.5 64,135 - +0.5 64,224 + ABZR87_RS00315 0.17 -1.2 64,224 + ABZR87_RS00315 0.17 -0.7 64,224 + ABZR87_RS00315 0.17 -0.7 64,224 + ABZR87_RS00315 0.17 -0.7 64,225 - ABZR87_RS00315 0.17 +0.2 64,239 + ABZR87_RS00315 0.18 -2.6 64,239 + ABZR87_RS00315 0.18 -0.1 64,239 + ABZR87_RS00315 0.18 +0.4 64,239 + ABZR87_RS00315 0.18 -1.6 64,240 - ABZR87_RS00315 0.19 -0.6 64,240 - ABZR87_RS00315 0.19 -0.9 64,240 - ABZR87_RS00315 0.19 -0.7 64,240 - ABZR87_RS00315 0.19 -1.3 64,272 + ABZR87_RS00315 0.21 -0.9 64,273 - ABZR87_RS00315 0.21 -0.1 64,381 + ABZR87_RS00315 0.30 -0.8 64,381 + ABZR87_RS00315 0.30 -0.4 64,382 - ABZR87_RS00315 0.30 +0.6 64,473 + ABZR87_RS00315 0.38 -1.9 64,473 + ABZR87_RS00315 0.38 -1.9 64,473 + ABZR87_RS00315 0.38 +0.2 64,473 + ABZR87_RS00315 0.38 -0.4 64,473 + ABZR87_RS00315 0.38 -1.4 64,474 - ABZR87_RS00315 0.38 -0.7 64,474 - ABZR87_RS00315 0.38 -1.6 64,474 - ABZR87_RS00315 0.38 +0.4 64,474 - ABZR87_RS00315 0.38 +1.0 64,474 - ABZR87_RS00315 0.38 +1.1 64,678 - ABZR87_RS00315 0.55 -2.4 64,678 - ABZR87_RS00315 0.55 -1.0 64,678 - ABZR87_RS00315 0.55 -0.9 64,726 - ABZR87_RS00315 0.59 -0.8 64,726 - ABZR87_RS00315 0.59 -1.2 64,752 + ABZR87_RS00315 0.61 +0.5 64,753 - ABZR87_RS00315 0.61 -1.8 64,803 + ABZR87_RS00315 0.65 -0.0 64,803 + ABZR87_RS00315 0.65 -0.6 64,803 + ABZR87_RS00315 0.65 +0.9 64,804 - ABZR87_RS00315 0.65 -0.5 64,804 - ABZR87_RS00315 0.65 +1.2
Or see this region's nucleotide sequence