Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20860

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
4,771,660	+		HSERO_RS20855	0.24	+0.1
4,771,842	-		HSERO_RS20855	0.45	+1.5
4,771,844	+		HSERO_RS20855	0.45	-0.1
4,772,066	+		HSERO_RS20855	0.71	-0.4
4,772,153	+		HSERO_RS20855	0.82	-0.1
4,772,170	+		HSERO_RS20855	0.84	+0.9
4,772,285	-				-0.2
4,772,295	+				-0.4
4,772,463	+				-0.7
4,772,470	-				+0.1
4,772,507	-				-1.4
4,772,633	+		HSERO_RS20860	0.21	+0.1
4,772,641	-		HSERO_RS20860	0.22	+5.5
4,772,641	-		HSERO_RS20860	0.22	+0.1
4,772,754	+		HSERO_RS20860	0.35	+1.9
4,772,762	-		HSERO_RS20860	0.36	-0.2
4,773,007	-		HSERO_RS20860	0.65	+0.7
4,773,017	-		HSERO_RS20860	0.66	-0.3
4,773,158	+		HSERO_RS20860	0.82	-0.1
4,773,158	+		HSERO_RS20860	0.82	-1.5
4,773,209	-		HSERO_RS20860	0.88	+1.5
4,773,314	-				+0.3
4,773,340	-				-0.0
4,773,382	+				-1.1
4,773,414	-				+1.6
4,773,529	-		HSERO_RS20865	0.14	-0.0
4,773,542	-		HSERO_RS20865	0.15	+0.1
4,773,545	+		HSERO_RS20865	0.15	+2.5
4,773,688	+		HSERO_RS20865	0.27	-0.2
4,773,779	-		HSERO_RS20865	0.34	-1.1
4,773,797	+				+0.6
4,773,838	+		HSERO_RS20865	0.38	+0.1
4,773,846	-		HSERO_RS20865	0.39	-0.7
4,773,874	+		HSERO_RS20865	0.41	-0.2
4,774,097	+		HSERO_RS20865	0.59	+0.7
4,774,225	-		HSERO_RS20865	0.69	-0.1
4,774,309	-		HSERO_RS20865	0.76	-1.3