Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS20120

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
4,616,781	+		HSERO_RS20115	0.69	+0.0
4,616,850	+		HSERO_RS20115	0.73	+0.1
4,616,853	-		HSERO_RS20115	0.73	+0.5
4,616,855	+		HSERO_RS20115	0.74	-0.2
4,616,896	-		HSERO_RS20115	0.76	+0.0
4,616,921	-		HSERO_RS20115	0.78	+0.9
4,616,963	+		HSERO_RS20115	0.80	+0.3
4,617,086	+		HSERO_RS20115	0.88	+0.0
4,617,109	-		HSERO_RS20115	0.89	-0.1
4,617,236	-				+0.1
4,617,296	-				-0.8
4,617,372	-				+1.7
4,617,445	-				+1.9
4,617,597	+				-0.2
4,617,687	-				+0.4
4,617,724	-				-0.1
4,617,782	+				+0.7
4,617,948	+		HSERO_RS20120	0.24	+1.3
4,617,948	+		HSERO_RS20120	0.24	-0.3
4,617,948	+		HSERO_RS20120	0.24	+1.1
4,617,948	+		HSERO_RS20120	0.24	-0.0
4,617,953	+		HSERO_RS20120	0.24	-0.1
4,617,953	+		HSERO_RS20120	0.24	+0.5
4,617,956	-		HSERO_RS20120	0.25	+0.4
4,618,001	+		HSERO_RS20120	0.30	-0.0
4,618,062	+		HSERO_RS20120	0.37	+0.7
4,618,375	+		HSERO_RS20120	0.75	+0.5
4,618,553	+				+0.0
4,618,745	-				+1.0
4,618,750	-				-0.1
4,618,765	+				+0.0
4,618,765	+				+0.3
4,618,766	+				-0.3
4,618,766	+				+0.4
4,618,774	-				-0.1
4,618,774	-				+0.0
4,618,846	-				+0.1
4,618,866	+		HSERO_RS20125	0.12	-1.4
4,619,026	+		HSERO_RS20125	0.49	+0.1
4,619,034	-		HSERO_RS20125	0.51	-0.6
4,619,193	-				-1.0
4,619,203	+				+0.5
4,619,222	+				-0.0
4,619,391	+				-0.2
4,619,489	-				+0.0