Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS18470 and HSERO_RS18475 are separated by 3 nucleotides HSERO_RS18475 and HSERO_RS18480 are separated by 83 nucleotides HSERO_RS18480 and HSERO_RS18485 are separated by 4 nucleotides HSERO_RS18485 and HSERO_RS18490 overlap by 8 nucleotides
HSERO_RS18470: HSERO_RS18470 - acyltransferase, at 4,240,900 to 4,241,688
_RS18470
HSERO_RS18475: HSERO_RS18475 - acyl carrier protein, at 4,241,692 to 4,241,955
_RS18475
HSERO_RS18480: HSERO_RS18480 - acyl carrier protein, at 4,242,039 to 4,242,296
_RS18480
HSERO_RS18485: HSERO_RS18485 - membrane protein, at 4,242,301 to 4,242,867
_RS18485
HSERO_RS18490: HSERO_RS18490 - AMP-binding protein, at 4,242,860 to 4,244,638
_RS18490
Position (kb) 4242
4243 Strain fitness (log2 ratio) -1
0
1
2
3 at 4241.505 kb on + strand, within HSERO_RS18470 at 4241.662 kb on + strand at 4241.665 kb on - strand at 4241.753 kb on - strand, within HSERO_RS18475 at 4241.944 kb on + strand at 4242.009 kb on - strand at 4242.014 kb on + strand at 4242.070 kb on + strand, within HSERO_RS18480 at 4242.121 kb on + strand, within HSERO_RS18480 at 4242.130 kb on - strand, within HSERO_RS18480 at 4242.136 kb on - strand, within HSERO_RS18480 at 4242.136 kb on - strand, within HSERO_RS18480 at 4242.181 kb on + strand, within HSERO_RS18480 at 4242.248 kb on - strand at 4242.275 kb on - strand at 4242.357 kb on + strand at 4242.365 kb on - strand, within HSERO_RS18485 at 4242.377 kb on + strand, within HSERO_RS18485 at 4242.425 kb on - strand, within HSERO_RS18485 at 4242.519 kb on + strand, within HSERO_RS18485 at 4242.688 kb on + strand, within HSERO_RS18485 at 4242.705 kb on + strand, within HSERO_RS18485 at 4242.733 kb on - strand, within HSERO_RS18485 at 4242.735 kb on + strand, within HSERO_RS18485 at 4242.735 kb on + strand, within HSERO_RS18485 at 4242.738 kb on - strand, within HSERO_RS18485 at 4242.742 kb on + strand, within HSERO_RS18485 at 4242.743 kb on - strand, within HSERO_RS18485 at 4242.750 kb on - strand, within HSERO_RS18485 at 4242.820 kb on + strand at 4243.054 kb on + strand, within HSERO_RS18490 at 4243.125 kb on + strand, within HSERO_RS18490 at 4243.159 kb on + strand, within HSERO_RS18490 at 4243.310 kb on + strand, within HSERO_RS18490 at 4243.313 kb on - strand, within HSERO_RS18490 at 4243.398 kb on + strand, within HSERO_RS18490 at 4243.398 kb on + strand, within HSERO_RS18490 at 4243.399 kb on + strand, within HSERO_RS18490 at 4243.455 kb on - strand, within HSERO_RS18490 at 4243.492 kb on - strand, within HSERO_RS18490 at 4243.758 kb on - strand, within HSERO_RS18490 at 4243.794 kb on + strand, within HSERO_RS18490
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM remove 4,241,505 + HSERO_RS18470 0.77 -0.1 4,241,662 + +0.3 4,241,665 - +0.1 4,241,753 - HSERO_RS18475 0.23 +0.3 4,241,944 + -0.3 4,242,009 - -0.5 4,242,014 + +0.5 4,242,070 + HSERO_RS18480 0.12 -0.2 4,242,121 + HSERO_RS18480 0.32 +0.3 4,242,130 - HSERO_RS18480 0.35 +0.4 4,242,136 - HSERO_RS18480 0.38 -0.0 4,242,136 - HSERO_RS18480 0.38 -0.5 4,242,181 + HSERO_RS18480 0.55 -0.1 4,242,248 - +1.9 4,242,275 - +0.2 4,242,357 + -0.3 4,242,365 - HSERO_RS18485 0.11 +0.0 4,242,377 + HSERO_RS18485 0.13 -1.7 4,242,425 - HSERO_RS18485 0.22 -0.1 4,242,519 + HSERO_RS18485 0.38 +0.6 4,242,688 + HSERO_RS18485 0.68 -0.7 4,242,705 + HSERO_RS18485 0.71 +0.3 4,242,733 - HSERO_RS18485 0.76 +2.8 4,242,735 + HSERO_RS18485 0.77 +0.7 4,242,735 + HSERO_RS18485 0.77 +2.1 4,242,738 - HSERO_RS18485 0.77 -0.6 4,242,742 + HSERO_RS18485 0.78 -0.4 4,242,743 - HSERO_RS18485 0.78 +0.1 4,242,750 - HSERO_RS18485 0.79 -0.0 4,242,820 + +0.5 4,243,054 + HSERO_RS18490 0.11 +0.0 4,243,125 + HSERO_RS18490 0.15 +0.4 4,243,159 + HSERO_RS18490 0.17 +0.3 4,243,310 + HSERO_RS18490 0.25 +1.4 4,243,313 - HSERO_RS18490 0.25 -0.8 4,243,398 + HSERO_RS18490 0.30 +0.9 4,243,398 + HSERO_RS18490 0.30 +1.0 4,243,399 + HSERO_RS18490 0.30 +0.2 4,243,455 - HSERO_RS18490 0.33 -0.5 4,243,492 - HSERO_RS18490 0.36 +0.2 4,243,758 - HSERO_RS18490 0.50 -1.3 4,243,794 + HSERO_RS18490 0.53 +1.5
Or see this region's nucleotide sequence