Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS17795

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS17790 and HSERO_RS17795 are separated by 200 nucleotidesHSERO_RS17795 and HSERO_RS17800 are separated by 46 nucleotides HSERO_RS17790: HSERO_RS17790 - ribonuclease, at 4,085,848 to 4,087,311 _RS17790 HSERO_RS17795: HSERO_RS17795 - ligase, at 4,087,512 to 4,088,738 _RS17795 HSERO_RS17800: HSERO_RS17800 - ATP-binding protein, at 4,088,785 to 4,090,521 _RS17800 Position (kb) 4087 4088 4089Strain fitness (log2 ratio) -1 0 1at 4087.432 kb on + strandat 4087.564 kb on - strandat 4087.601 kb on - strandat 4087.868 kb on - strand, within HSERO_RS17795at 4088.112 kb on - strand, within HSERO_RS17795at 4088.117 kb on - strand, within HSERO_RS17795at 4088.273 kb on - strand, within HSERO_RS17795at 4088.656 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM
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4,087,432 + -0.5
4,087,564 - +0.2
4,087,601 - -0.3
4,087,868 - HSERO_RS17795 0.29 -0.3
4,088,112 - HSERO_RS17795 0.49 -0.6
4,088,117 - HSERO_RS17795 0.49 +0.2
4,088,273 - HSERO_RS17795 0.62 +1.4
4,088,656 - -0.3

Or see this region's nucleotide sequence