Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS16580

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
3,794,786	-		HSERO_RS16575	0.35	+0.2
3,794,841	+		HSERO_RS16575	0.40	-0.3
3,794,998	-				+1.9
3,795,047	+		HSERO_RS16575	0.55	-1.1
3,795,089	-		HSERO_RS16575	0.59	-0.8
3,795,125	+		HSERO_RS16575	0.61	-2.4
3,795,131	+		HSERO_RS16575	0.62	-0.2
3,795,303	+		HSERO_RS16575	0.75	+0.3
3,795,311	-		HSERO_RS16575	0.76	+0.0
3,795,311	-		HSERO_RS16575	0.76	-0.6
3,795,321	+		HSERO_RS16575	0.77	+0.7
3,795,329	-		HSERO_RS16575	0.77	-0.4
3,795,386	+		HSERO_RS16575	0.82	-0.3
3,795,386	+		HSERO_RS16575	0.82	+0.5
3,795,548	+				+0.1
3,795,613	-				-0.6
3,795,613	-				+0.7
3,795,950	-		HSERO_RS16580	0.19	+0.0
3,796,019	+		HSERO_RS16580	0.24	-0.1
3,796,066	-		HSERO_RS16580	0.27	-0.4
3,796,156	+				-1.6
3,796,181	+		HSERO_RS16580	0.35	+1.0
3,796,217	-		HSERO_RS16580	0.38	-1.0
3,796,424	+		HSERO_RS16580	0.53	+0.3
3,796,507	-		HSERO_RS16580	0.59	+1.0
3,796,610	-		HSERO_RS16580	0.66	+1.4
3,796,620	-		HSERO_RS16580	0.67	+0.1
3,796,720	-		HSERO_RS16580	0.74	-0.3
3,796,721	-		HSERO_RS16580	0.75	+0.6
3,796,789	+		HSERO_RS16580	0.79	-0.5
3,796,806	+		HSERO_RS16580	0.81	+0.0
3,796,859	+		HSERO_RS16580	0.85	+0.1
3,796,859	+		HSERO_RS16580	0.85	+0.1
3,796,860	-		HSERO_RS16580	0.85	+4.0
3,796,877	+		HSERO_RS16580	0.86	+0.4
3,797,260	-				+0.1
3,797,364	+		HSERO_RS16585	0.14	-0.0
3,797,699	-		HSERO_RS16585	0.34	+1.9
3,797,739	+		HSERO_RS16585	0.37	-0.2
3,797,799	+		HSERO_RS16585	0.41	-0.3
3,797,899	-		HSERO_RS16585	0.47	-1.8
3,797,926	+		HSERO_RS16585	0.48	-1.5