Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15885

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
3,625,583	-		HSERO_RS15880	0.29	-1.5
3,625,601	+		HSERO_RS15880	0.31	-0.1
3,625,679	-		HSERO_RS15880	0.40	-0.3
3,625,742	-		HSERO_RS15880	0.48	-1.2
3,625,770	-		HSERO_RS15880	0.51	-0.9
3,625,770	-		HSERO_RS15880	0.51	-0.4
3,625,890	-		HSERO_RS15880	0.65	+0.0
3,626,035	+		HSERO_RS15880	0.83	-1.4
3,626,035	+		HSERO_RS15880	0.83	-0.1
3,626,043	-		HSERO_RS15880	0.84	-0.4
3,626,118	+				-1.4
3,626,126	-				-0.9
3,626,275	-				+0.9
3,626,348	-				+1.2
3,626,648	-				+1.9
3,626,714	+		HSERO_RS15885	0.25	-0.5
3,626,819	-		HSERO_RS15885	0.43	-0.8
3,626,871	-		HSERO_RS15885	0.52	-0.5
3,626,871	-		HSERO_RS15885	0.52	-0.6
3,626,987	+		HSERO_RS15885	0.72	+1.4
3,627,043	-		HSERO_RS15885	0.82	-0.7
3,627,048	-		HSERO_RS15885	0.83	+0.1
3,627,048	-		HSERO_RS15885	0.83	+0.9
3,627,120	-				+0.6
3,627,224	+				+3.2
3,627,272	-				+0.0
3,627,274	+				-0.5
3,627,284	+				-0.9
3,627,434	+				+0.9
3,627,494	-		HSERO_RS15890	0.33	-2.7
3,627,557	-		HSERO_RS15890	0.42	-2.0
3,627,622	-		HSERO_RS15890	0.50	-0.4
3,627,669	-		HSERO_RS15890	0.57	+2.4
3,627,747	+		HSERO_RS15890	0.67	-0.3
3,627,888	-		HSERO_RS15890	0.86	-0.4
3,627,938	+				-1.5
3,628,075	-				+0.7
3,628,102	+				-2.4