Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS15255

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
3,460,433	+		HSERO_RS15240	0.78	-1.1
3,460,474	+				-0.1
3,460,516	+				+0.1
3,460,629	-		HSERO_RS15245	0.12	+0.2
3,460,869	-		HSERO_RS15245	0.83	+0.2
3,460,872	+		HSERO_RS15245	0.83	-0.1
3,460,927	+				+0.0
3,460,960	-				+0.9
3,461,099	+		HSERO_RS15250	0.34	-0.3
3,461,099	+				+1.3
3,461,249	-		HSERO_RS15250	0.71	+0.5
3,461,296	+		HSERO_RS15250	0.83	+0.9
3,461,297	-		HSERO_RS15250	0.83	-1.1
3,461,297	-		HSERO_RS15250	0.83	-0.2
3,461,306	+		HSERO_RS15250	0.85	-0.5
3,461,306	+		HSERO_RS15250	0.85	+0.1
3,461,314	-		HSERO_RS15250	0.87	+0.9
3,461,352	-				-0.1
3,461,508	-		HSERO_RS15255	0.16	-1.0
3,461,543	-		HSERO_RS15255	0.20	-0.4
3,461,566	+		HSERO_RS15255	0.23	-0.2
3,461,827	-		HSERO_RS15255	0.54	+0.3
3,461,849	+		HSERO_RS15255	0.56	-0.7
3,462,021	+		HSERO_RS15255	0.77	-0.1
3,462,268	+				+0.0
3,462,320	+				-0.1
3,462,370	+				+0.2
3,462,378	-				+0.5
3,462,412	-				-0.2
3,462,415	-				+0.0
3,462,423	+				-0.6
3,462,428	+				-0.7
3,462,436	-				-0.8
3,462,614	+				+0.2
3,462,740	-				+0.7
3,462,785	+				-0.9
3,462,897	-				-0.5
3,462,945	+				-0.2
3,463,040	+				-0.5
3,463,134	+				+0.1