Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS11715

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
2,647,768	-				-0.7
2,647,823	+				-0.3
2,648,104	+		HSERO_RS11705	0.51	-0.1
2,648,112	-		HSERO_RS11705	0.53	-0.3
2,648,296	-		HSERO_RS11705	0.87	-0.5
2,648,318	-				-0.4
2,648,375	-				+1.1
2,648,389	-				-0.0
2,648,399	+				+2.0
2,648,407	-				+1.1
2,648,408	+				-0.2
2,648,455	+				+0.3
2,648,528	+				-0.0
2,648,704	+		HSERO_RS11710	0.77	+1.0
2,648,771	-				+0.2
2,648,842	-		HSERO_RS11715	0.11	-0.3
2,648,917	-		HSERO_RS11715	0.21	-0.2
2,649,256	+		HSERO_RS11715	0.66	+0.3
2,649,375	+		HSERO_RS11715	0.82	-1.8
2,649,423	+		HSERO_RS11715	0.88	-0.8
2,649,496	+				-0.0
2,649,820	+		HSERO_RS11720	0.43	+0.1
2,649,857	+		HSERO_RS11720	0.49	-0.9
2,649,865	-		HSERO_RS11720	0.50	-0.6
2,649,867	+		HSERO_RS11720	0.50	-1.7
2,649,907	-		HSERO_RS11720	0.56	+0.3
2,649,933	+		HSERO_RS11720	0.60	-1.4
2,650,055	-		HSERO_RS11720	0.79	-0.3
2,650,131	-				-0.0
2,650,271	-				-0.2
2,650,286	+				+0.1
2,650,321	+				+0.2
2,650,321	+				-0.2
2,650,388	+		HSERO_RS11725	0.17	-0.2