Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS10240

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
2,309,110	-		HSERO_RS10235	0.45	-0.1
2,309,333	-				-1.4
2,309,438	-				+0.1
2,309,455	+		HSERO_RS10235	0.70	-0.3
2,309,544	+		HSERO_RS10235	0.76	+0.1
2,309,902	+				-0.4
2,309,952	+				+0.1
2,309,957	+				-0.2
2,309,998	-				-0.2
2,310,079	-		HSERO_RS10240	0.10	-0.3
2,310,449	-		HSERO_RS10240	0.29	-0.5
2,311,057	+		HSERO_RS10240	0.60	-0.7
2,311,076	-		HSERO_RS10240	0.61	-0.5
2,311,390	-		HSERO_RS10240	0.77	-0.3
2,311,456	-		HSERO_RS10240	0.80	+0.2
2,311,715	+				-1.2
2,312,129	-		HSERO_RS10245	0.22	-0.2
2,312,264	-		HSERO_RS10245	0.33	-0.9
2,312,530	+		HSERO_RS10245	0.55	+1.1
2,312,701	+		HSERO_RS10245	0.69	-0.2
2,312,765	+		HSERO_RS10245	0.74	+1.0
2,312,825	-		HSERO_RS10245	0.79	-0.2