Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS09415

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
2,141,309	-				-0.5
2,141,430	-				-0.1
2,141,464	-				+1.7
2,141,479	-				-0.8
2,141,571	+		HSERO_RS09415	0.18	+0.5
2,141,912	-		HSERO_RS09415	0.50	+0.8
2,141,917	-		HSERO_RS09415	0.50	-0.1
2,141,926	-		HSERO_RS09415	0.51	-0.1
2,141,961	+		HSERO_RS09415	0.54	+0.3
2,142,139	+		HSERO_RS09415	0.71	-0.0
2,142,348	-				+0.0
2,142,384	+				-0.3
2,142,445	-				-0.5
2,142,541	-				+1.7
2,142,595	+				-0.3
2,142,675	-		HSERO_RS09420	0.16	-1.1
2,142,680	-		HSERO_RS09420	0.17	-1.8
2,142,805	+		HSERO_RS09420	0.36	+0.4
2,142,923	-		HSERO_RS09420	0.54	-0.5
2,142,976	-				-0.7
2,143,303	-		HSERO_RS09425	0.18	-0.8
2,143,329	-		HSERO_RS09425	0.25	-0.7
2,143,354	+		HSERO_RS09425	0.31	+0.1
2,143,409	+		HSERO_RS09425	0.46	-0.2
2,143,412	-		HSERO_RS09425	0.47	+0.7