Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS08970

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
2,027,041	+				-0.5
2,027,041	+				-0.2
2,027,148	+		HSERO_RS08965	0.13	-1.5
2,027,457	-		HSERO_RS08965	0.54	-0.5
2,027,457	-		HSERO_RS08965	0.54	+2.7
2,027,669	+		HSERO_RS08965	0.83	+0.6
2,027,669	+		HSERO_RS08965	0.83	-0.3
2,027,670	+		HSERO_RS08965	0.83	-0.0
2,027,678	-		HSERO_RS08965	0.84	+1.5
2,027,874	+				-0.3
2,028,192	+		HSERO_RS08970	0.70	+0.7
2,028,205	-		HSERO_RS08970	0.72	-2.1
2,028,215	-		HSERO_RS08970	0.75	-0.2
2,028,229	-		HSERO_RS08970	0.78	+0.9
2,028,286	+				-0.2
2,028,410	-				+0.4
2,028,420	-				-0.6
2,028,438	-				-0.7
2,028,495	+				+0.0
2,028,503	-				-0.3
2,028,647	-		HSERO_RS08975	0.39	-0.4
2,028,676	-		HSERO_RS08975	0.45	+0.7
2,028,748	-		HSERO_RS08975	0.61	-1.0
2,028,918	+				-0.7
2,028,941	-				-0.1
2,028,943	+				-0.2
2,029,236	+		HSERO_RS08980	0.41	-0.0