Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05885

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
1,337,424	-				-1.0
1,337,613	+				-0.3
1,337,619	+				-1.1
1,337,670	-				-0.8
1,337,733	-				-0.3
1,337,834	+		HSERO_RS05885	0.11	-1.1
1,337,866	+		HSERO_RS05885	0.13	+0.2
1,337,957	+		HSERO_RS05885	0.17	+0.8
1,338,132	-		HSERO_RS05885	0.26	+0.8
1,338,327	-		HSERO_RS05885	0.35	-0.9
1,338,374	-		HSERO_RS05885	0.37	-0.6
1,338,398	-		HSERO_RS05885	0.39	+0.4
1,338,502	-		HSERO_RS05885	0.44	-1.0
1,338,566	-				+0.8
1,338,657	-		HSERO_RS05885	0.51	+0.1
1,338,657	-		HSERO_RS05885	0.51	-0.4
1,338,657	-		HSERO_RS05885	0.51	-0.5
1,338,657	-		HSERO_RS05885	0.51	-0.5
1,338,675	-		HSERO_RS05885	0.52	-1.9
1,338,685	-		HSERO_RS05885	0.53	+0.2
1,338,694	+		HSERO_RS05885	0.53	-1.9
1,338,858	-		HSERO_RS05885	0.61	-1.3
1,338,881	-		HSERO_RS05885	0.62	-0.3
1,339,003	+		HSERO_RS05885	0.68	+0.0
1,339,052	+		HSERO_RS05885	0.70	+0.1
1,339,092	+		HSERO_RS05885	0.72	-0.6
1,339,110	-		HSERO_RS05885	0.73	-0.8
1,339,355	-		HSERO_RS05885	0.85	+0.2
1,339,377	+		HSERO_RS05885	0.86	-0.8
1,339,390	-		HSERO_RS05885	0.87	-1.0
1,339,465	-				-0.4
1,339,616	+				-0.4
1,339,684	-				-0.9
1,339,923	+				+0.2
1,340,108	-		HSERO_RS05890	0.30	-0.7
1,340,190	-		HSERO_RS05890	0.40	-2.3
1,340,607	+				+0.2