Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05775

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
1,314,748	-		HSERO_RS05770	0.50	+1.0
1,314,769	-		HSERO_RS05770	0.51	-0.6
1,314,877	+		HSERO_RS05770	0.58	+0.5
1,314,909	+		HSERO_RS05770	0.60	+1.6
1,314,994	-		HSERO_RS05770	0.65	+0.6
1,315,085	+		HSERO_RS05770	0.71	+0.7
1,315,102	+		HSERO_RS05770	0.72	-0.6
1,315,220	+		HSERO_RS05770	0.79	-0.7
1,315,345	-		HSERO_RS05770	0.87	-0.5
1,315,579	+				+0.0
1,315,579	+				-0.6
1,315,579	+				-0.8
1,315,587	-				-0.3
1,315,587	-				-2.3
1,315,587	-				-0.7
1,315,587	-				+0.8
1,315,607	+				-0.6
1,315,824	-		HSERO_RS05775	0.11	-0.3
1,315,824	-		HSERO_RS05775	0.11	-0.6
1,315,909	-		HSERO_RS05775	0.20	+0.1
1,315,989	+		HSERO_RS05775	0.28	-0.8
1,315,997	-		HSERO_RS05775	0.29	-1.0
1,315,997	-		HSERO_RS05775	0.29	+2.3
1,316,119	-		HSERO_RS05775	0.41	-0.5
1,316,158	-		HSERO_RS05775	0.45	-1.6
1,316,173	-		HSERO_RS05775	0.47	-0.2
1,316,186	-		HSERO_RS05775	0.48	-0.6
1,316,288	+		HSERO_RS05775	0.59	-0.7
1,316,335	-		HSERO_RS05775	0.63	-0.1
1,316,335	-		HSERO_RS05775	0.63	+0.2
1,316,484	+		HSERO_RS05775	0.79	+0.2
1,316,671	+				+1.1
1,316,884	-		HSERO_RS05780	0.17	-0.6
1,316,921	-		HSERO_RS05780	0.26	-0.8
1,316,981	-		HSERO_RS05780	0.39	-0.5
1,316,995	+		HSERO_RS05780	0.42	-0.3
1,317,003	-		HSERO_RS05780	0.44	-1.2
1,317,018	+		HSERO_RS05780	0.48	-0.9
1,317,248	-				-0.5
1,317,272	+				+1.0
1,317,275	-				-0.3
1,317,280	-				-0.2
1,317,343	+				-1.3
1,317,343	+				-0.5
1,317,382	-				-0.0
1,317,382	-				+0.3
1,317,619	+		HSERO_RS05785	0.25	-1.0
1,317,659	-		HSERO_RS05785	0.28	-1.1