Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05120

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
1,131,572	-		HSERO_RS05115	0.69	-3.7
1,131,964	-		HSERO_RS05115	0.86	-0.5
1,131,985	+		HSERO_RS05115	0.87	-2.5
1,132,000	+		HSERO_RS05115	0.87	-2.1
1,132,105	+				-1.4
1,132,163	+				-3.7
1,132,171	-				-0.3
1,132,171	-				-3.0
1,132,393	+				-2.5
1,132,491	+		HSERO_RS05120	0.16	-2.9
1,132,717	+		HSERO_RS05120	0.38	-1.7
1,132,725	-		HSERO_RS05120	0.39	-2.1
1,132,767	+		HSERO_RS05120	0.43	-1.5
1,132,879	-		HSERO_RS05120	0.54	-2.8
1,132,999	+				-1.9
1,133,114	-		HSERO_RS05120	0.76	-0.8
1,133,287	+				-0.5
1,133,316	-				-1.6
1,133,338	-				-3.2
1,133,352	+				-1.4
1,133,398	+				-3.2
1,133,443	+				-2.2
1,133,443	+				-3.9
1,133,734	-		HSERO_RS05125	0.14	+10.0
1,133,846	+		HSERO_RS05125	0.28	+8.7
1,133,854	-		HSERO_RS05125	0.29	+9.6
1,133,894	+		HSERO_RS05125	0.34	+10.3
1,133,894	+		HSERO_RS05125	0.34	+9.4
1,133,978	-		HSERO_RS05125	0.44	+9.3
1,134,308	-		HSERO_RS05125	0.84	+10.1