Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS05080

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Carbon source 2-Deoxy-D-Ribose 5 mM
1,121,790	+		HSERO_RS05075	0.36	+0.2
1,121,791	+		HSERO_RS05075	0.36	-0.4
1,121,815	-		HSERO_RS05075	0.38	+0.0
1,121,944	+		HSERO_RS05075	0.51	+0.3
1,122,036	-		HSERO_RS05075	0.60	-0.2
1,122,036	-		HSERO_RS05075	0.60	-0.1
1,122,041	-		HSERO_RS05075	0.61	-1.1
1,122,043	+		HSERO_RS05075	0.61	+1.2
1,122,084	+		HSERO_RS05075	0.65	-1.8
1,122,089	+		HSERO_RS05075	0.65	-0.9
1,122,102	-		HSERO_RS05075	0.67	-0.2
1,122,132	+		HSERO_RS05075	0.70	+0.4
1,122,132	+		HSERO_RS05075	0.70	-1.2
1,122,140	-		HSERO_RS05075	0.70	+0.2
1,122,140	-		HSERO_RS05075	0.70	-0.3
1,122,140	-		HSERO_RS05075	0.70	+1.4
1,122,252	-		HSERO_RS05075	0.82	+0.0
1,122,268	+		HSERO_RS05075	0.83	-0.7
1,122,305	+		HSERO_RS05075	0.87	+1.1
1,122,328	+		HSERO_RS05075	0.89	-0.3
1,122,415	-				-1.1
1,122,459	-				-0.5
1,122,466	+				+0.4
1,122,466	+				-0.5
1,122,532	-				-0.2
1,122,536	+				-0.6
1,122,536	+				-0.8
1,122,627	-				+0.5
1,122,718	-				-0.1
1,122,953	+		HSERO_RS05080	0.42	+0.6
1,123,009	+		HSERO_RS05080	0.50	-1.0
1,123,044	+		HSERO_RS05080	0.55	+0.1
1,123,050	-		HSERO_RS05080	0.56	-1.0
1,123,283	-				+1.4
1,123,342	+				-0.4
1,123,342	+				-0.1
1,123,342	+				-0.0
1,123,342	+				+1.0
1,123,352	+				-1.7
1,123,367	+				-0.6
1,123,367	+				+1.2
1,123,479	+				+1.8
1,123,645	-		HSERO_RS05085	0.13	+11.2
1,123,650	-		HSERO_RS05085	0.14	+10.6
1,123,733	+		HSERO_RS05085	0.22	+10.6
1,123,781	-		HSERO_RS05085	0.26	+10.4
1,123,900	-		HSERO_RS05085	0.38	+10.6
1,123,900	-		HSERO_RS05085	0.38	+10.7
1,123,929	+		HSERO_RS05085	0.40	+10.9
1,124,127	+		HSERO_RS05085	0.59	+10.6
1,124,266	-		HSERO_RS05085	0.73	+10.5
1,124,320	+		HSERO_RS05085	0.78	+10.1
1,124,335	+		HSERO_RS05085	0.79	+10.0