Strain Fitness in Herbaspirillum seropedicae SmR1 around HSERO_RS04090

Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHSERO_RS04085 and HSERO_RS04090 are separated by 162 nucleotidesHSERO_RS04090 and HSERO_RS04095 are separated by 51 nucleotides HSERO_RS04085: HSERO_RS04085 - twitching motility protein PilT, at 893,466 to 894,563 _RS04085 HSERO_RS04090: HSERO_RS04090 - molecular chaperone Tir, at 894,726 to 895,127 _RS04090 HSERO_RS04095: HSERO_RS04095 - hypothetical protein, at 895,179 to 896,624 _RS04095 Position (kb) 894 895 896Strain fitness (log2 ratio) -1 0 1at 894.656 kb on - strandat 894.742 kb on + strandat 894.801 kb on + strand, within HSERO_RS04090at 894.994 kb on + strand, within HSERO_RS04090at 895.000 kb on - strand, within HSERO_RS04090at 895.007 kb on - strand, within HSERO_RS04090at 895.069 kb on + strand, within HSERO_RS04090at 895.398 kb on + strand, within HSERO_RS04095at 895.443 kb on + strand, within HSERO_RS04095at 895.674 kb on - strand, within HSERO_RS04095at 896.064 kb on + strand, within HSERO_RS04095

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM
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894,656 - +0.0
894,742 + +0.3
894,801 + HSERO_RS04090 0.19 +0.5
894,994 + HSERO_RS04090 0.67 -0.5
895,000 - HSERO_RS04090 0.68 -0.3
895,007 - HSERO_RS04090 0.70 +0.2
895,069 + HSERO_RS04090 0.85 +0.1
895,398 + HSERO_RS04095 0.15 +0.7
895,443 + HSERO_RS04095 0.18 -0.4
895,674 - HSERO_RS04095 0.34 -0.1
896,064 + HSERO_RS04095 0.61 +0.2

Or see this region's nucleotide sequence