Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01490 and HSERO_RS01495 are separated by 600 nucleotides HSERO_RS01495 and HSERO_RS01500 are separated by 116 nucleotides HSERO_RS01500 and HSERO_RS01505 overlap by 4 nucleotides
HSERO_RS01490: HSERO_RS01490 - guanylate cyclase, at 320,928 to 323,201
_RS01490
HSERO_RS01495: HSERO_RS01495 - Fe-S osidoreductase, at 323,802 to 325,328
_RS01495
HSERO_RS01500: HSERO_RS01500 - transketolase, at 325,445 to 326,263
_RS01500
HSERO_RS01505: HSERO_RS01505 - transketolase, at 326,260 to 327,225
_RS01505
Position (kb) 323
324
325
326 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 322.852 kb on - strand, within HSERO_RS01490 at 322.917 kb on + strand, within HSERO_RS01490 at 322.942 kb on - strand, within HSERO_RS01490 at 322.990 kb on + strand at 323.039 kb on + strand at 323.166 kb on + strand at 323.184 kb on - strand at 323.200 kb on - strand at 323.200 kb on - strand at 323.218 kb on + strand at 323.229 kb on - strand at 323.238 kb on - strand at 323.346 kb on + strand at 323.369 kb on - strand at 323.492 kb on - strand at 323.657 kb on + strand at 323.665 kb on - strand at 323.762 kb on + strand at 323.766 kb on - strand at 323.770 kb on - strand at 323.813 kb on + strand at 323.821 kb on - strand at 323.835 kb on + strand at 323.976 kb on - strand, within HSERO_RS01495 at 324.140 kb on + strand, within HSERO_RS01495 at 324.260 kb on + strand, within HSERO_RS01495 at 324.268 kb on - strand, within HSERO_RS01495 at 324.268 kb on - strand at 324.329 kb on + strand, within HSERO_RS01495 at 324.567 kb on + strand, within HSERO_RS01495 at 324.634 kb on + strand, within HSERO_RS01495 at 324.689 kb on + strand, within HSERO_RS01495 at 324.697 kb on - strand, within HSERO_RS01495 at 324.804 kb on + strand, within HSERO_RS01495 at 324.971 kb on + strand, within HSERO_RS01495 at 324.971 kb on + strand, within HSERO_RS01495 at 325.065 kb on + strand, within HSERO_RS01495 at 325.067 kb on + strand, within HSERO_RS01495 at 325.166 kb on - strand, within HSERO_RS01495 at 325.348 kb on - strand at 325.388 kb on + strand at 325.803 kb on + strand, within HSERO_RS01500 at 325.811 kb on - strand, within HSERO_RS01500 at 325.816 kb on - strand, within HSERO_RS01500 at 325.877 kb on - strand, within HSERO_RS01500 at 326.145 kb on - strand, within HSERO_RS01500 at 326.145 kb on - strand, within HSERO_RS01500 at 326.225 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM remove 322,852 - HSERO_RS01490 0.85 -1.4 322,917 + HSERO_RS01490 0.87 +1.2 322,942 - HSERO_RS01490 0.89 +0.4 322,990 + +0.4 323,039 + +1.3 323,166 + +0.0 323,184 - -0.3 323,200 - -0.5 323,200 - +1.2 323,218 + +0.9 323,229 - +0.1 323,238 - -0.1 323,346 + -1.5 323,369 - -0.4 323,492 - +0.6 323,657 + -0.0 323,665 - -0.3 323,762 + -0.2 323,766 - +4.3 323,770 - -0.5 323,813 + -0.1 323,821 - +0.2 323,835 + +0.0 323,976 - HSERO_RS01495 0.11 +0.4 324,140 + HSERO_RS01495 0.22 -0.2 324,260 + HSERO_RS01495 0.30 +0.4 324,268 - HSERO_RS01495 0.31 +0.1 324,268 - +1.0 324,329 + HSERO_RS01495 0.35 +0.8 324,567 + HSERO_RS01495 0.50 +0.4 324,634 + HSERO_RS01495 0.54 -0.2 324,689 + HSERO_RS01495 0.58 -0.8 324,697 - HSERO_RS01495 0.59 +0.1 324,804 + HSERO_RS01495 0.66 +0.5 324,971 + HSERO_RS01495 0.77 +0.3 324,971 + HSERO_RS01495 0.77 +0.5 325,065 + HSERO_RS01495 0.83 +0.7 325,067 + HSERO_RS01495 0.83 +1.0 325,166 - HSERO_RS01495 0.89 +0.1 325,348 - -0.5 325,388 + +1.8 325,803 + HSERO_RS01500 0.44 -0.7 325,811 - HSERO_RS01500 0.45 -0.4 325,816 - HSERO_RS01500 0.45 -0.5 325,877 - HSERO_RS01500 0.53 -1.6 326,145 - HSERO_RS01500 0.85 -0.1 326,145 - HSERO_RS01500 0.85 -0.5 326,225 - +0.4
Or see this region's nucleotide sequence