Experiment: Carbon source 2-Deoxy-D-Ribose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01485 and HSERO_RS01490 are separated by 179 nucleotides HSERO_RS01490 and HSERO_RS01495 are separated by 600 nucleotides
HSERO_RS01485: HSERO_RS01485 - hypothetical protein, at 319,906 to 320,748
_RS01485
HSERO_RS01490: HSERO_RS01490 - guanylate cyclase, at 320,928 to 323,201
_RS01490
HSERO_RS01495: HSERO_RS01495 - Fe-S osidoreductase, at 323,802 to 325,328
_RS01495
Position (kb) 320
321
322
323
324 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 319.961 kb on + strand at 320.033 kb on - strand, within HSERO_RS01485 at 320.069 kb on + strand, within HSERO_RS01485 at 320.099 kb on + strand, within HSERO_RS01485 at 320.224 kb on + strand, within HSERO_RS01485 at 320.325 kb on + strand, within HSERO_RS01485 at 320.445 kb on + strand, within HSERO_RS01485 at 320.445 kb on + strand, within HSERO_RS01485 at 320.592 kb on - strand, within HSERO_RS01485 at 320.648 kb on + strand, within HSERO_RS01485 at 320.656 kb on - strand, within HSERO_RS01485 at 320.656 kb on - strand, within HSERO_RS01485 at 320.777 kb on + strand at 320.814 kb on + strand at 321.009 kb on + strand at 321.010 kb on - strand at 321.014 kb on + strand at 321.232 kb on + strand, within HSERO_RS01490 at 321.265 kb on + strand, within HSERO_RS01490 at 321.336 kb on + strand, within HSERO_RS01490 at 321.734 kb on + strand, within HSERO_RS01490 at 321.848 kb on + strand at 321.961 kb on - strand, within HSERO_RS01490 at 322.009 kb on + strand, within HSERO_RS01490 at 322.487 kb on + strand, within HSERO_RS01490 at 322.595 kb on + strand, within HSERO_RS01490 at 322.713 kb on + strand, within HSERO_RS01490 at 322.852 kb on - strand, within HSERO_RS01490 at 322.917 kb on + strand, within HSERO_RS01490 at 322.942 kb on - strand, within HSERO_RS01490 at 322.990 kb on + strand at 323.039 kb on + strand at 323.166 kb on + strand at 323.184 kb on - strand at 323.200 kb on - strand at 323.200 kb on - strand at 323.218 kb on + strand at 323.229 kb on - strand at 323.238 kb on - strand at 323.346 kb on + strand at 323.369 kb on - strand at 323.492 kb on - strand at 323.657 kb on + strand at 323.665 kb on - strand at 323.762 kb on + strand at 323.766 kb on - strand at 323.770 kb on - strand at 323.813 kb on + strand at 323.821 kb on - strand at 323.835 kb on + strand at 323.976 kb on - strand, within HSERO_RS01495 at 324.140 kb on + strand, within HSERO_RS01495
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source 2-Deoxy-D-Ribose 5 mM remove 319,961 + -0.2 320,033 - HSERO_RS01485 0.15 +0.2 320,069 + HSERO_RS01485 0.19 -0.1 320,099 + HSERO_RS01485 0.23 -0.6 320,224 + HSERO_RS01485 0.38 +1.0 320,325 + HSERO_RS01485 0.50 +1.0 320,445 + HSERO_RS01485 0.64 -0.2 320,445 + HSERO_RS01485 0.64 -0.7 320,592 - HSERO_RS01485 0.81 +0.4 320,648 + HSERO_RS01485 0.88 -0.2 320,656 - HSERO_RS01485 0.89 -0.6 320,656 - HSERO_RS01485 0.89 -0.4 320,777 + -0.5 320,814 + -0.8 321,009 + +0.3 321,010 - +2.0 321,014 + +1.0 321,232 + HSERO_RS01490 0.13 +0.4 321,265 + HSERO_RS01490 0.15 +0.2 321,336 + HSERO_RS01490 0.18 +0.6 321,734 + HSERO_RS01490 0.35 +0.1 321,848 + +0.4 321,961 - HSERO_RS01490 0.45 +1.0 322,009 + HSERO_RS01490 0.48 +0.5 322,487 + HSERO_RS01490 0.69 +0.6 322,595 + HSERO_RS01490 0.73 +1.3 322,713 + HSERO_RS01490 0.78 +0.4 322,852 - HSERO_RS01490 0.85 -1.4 322,917 + HSERO_RS01490 0.87 +1.2 322,942 - HSERO_RS01490 0.89 +0.4 322,990 + +0.4 323,039 + +1.3 323,166 + +0.0 323,184 - -0.3 323,200 - -0.5 323,200 - +1.2 323,218 + +0.9 323,229 - +0.1 323,238 - -0.1 323,346 + -1.5 323,369 - -0.4 323,492 - +0.6 323,657 + -0.0 323,665 - -0.3 323,762 + -0.2 323,766 - +4.3 323,770 - -0.5 323,813 + -0.1 323,821 - +0.2 323,835 + +0.0 323,976 - HSERO_RS01495 0.11 +0.4 324,140 + HSERO_RS01495 0.22 -0.2
Or see this region's nucleotide sequence