Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29160

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29155 and AO356_29160 are separated by 187 nucleotidesAO356_29160 and AO356_29165 are separated by 15 nucleotides AO356_29155: AO356_29155 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 6,779,467 to 6,780,591 _29155 AO356_29160: AO356_29160 - (2Fe-2S)-binding protein, at 6,780,779 to 6,781,132 _29160 AO356_29165: AO356_29165 - glyoxalase, at 6,781,148 to 6,782,086 _29165 Position (kb) 6780 6781 6782Strain fitness (log2 ratio) -2 -1 0 1at 6779.940 kb on - strand, within AO356_29155at 6780.071 kb on + strand, within AO356_29155at 6780.299 kb on + strand, within AO356_29155at 6780.358 kb on - strand, within AO356_29155at 6780.441 kb on + strand, within AO356_29155at 6780.541 kb on + strandat 6780.542 kb on - strandat 6780.607 kb on - strandat 6780.607 kb on - strandat 6780.735 kb on - strandat 6780.747 kb on + strandat 6780.747 kb on + strandat 6780.747 kb on + strandat 6780.748 kb on - strandat 6780.748 kb on - strandat 6780.748 kb on - strandat 6780.763 kb on - strandat 6780.771 kb on + strandat 6780.771 kb on + strandat 6780.772 kb on - strandat 6780.772 kb on - strandat 6780.772 kb on - strandat 6780.772 kb on - strandat 6780.995 kb on - strand, within AO356_29160at 6780.995 kb on - strand, within AO356_29160at 6781.318 kb on - strand, within AO356_29165at 6781.605 kb on + strand, within AO356_29165at 6781.606 kb on - strand, within AO356_29165at 6781.643 kb on - strand, within AO356_29165at 6782.105 kb on + strandat 6782.110 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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6,779,940 - AO356_29155 0.42 -0.7
6,780,071 + AO356_29155 0.54 -0.4
6,780,299 + AO356_29155 0.74 +0.3
6,780,358 - AO356_29155 0.79 -0.7
6,780,441 + AO356_29155 0.87 +0.0
6,780,541 + -0.5
6,780,542 - +1.5
6,780,607 - -0.3
6,780,607 - -1.1
6,780,735 - +0.2
6,780,747 + +0.7
6,780,747 + -0.1
6,780,747 + -0.7
6,780,748 - -2.2
6,780,748 - +0.3
6,780,748 - -0.1
6,780,763 - -0.5
6,780,771 + -0.8
6,780,771 + -1.1
6,780,772 - +0.7
6,780,772 - -0.5
6,780,772 - +0.5
6,780,772 - -0.6
6,780,995 - AO356_29160 0.61 -0.5
6,780,995 - AO356_29160 0.61 -0.6
6,781,318 - AO356_29165 0.18 -0.1
6,781,605 + AO356_29165 0.49 -1.2
6,781,606 - AO356_29165 0.49 -0.3
6,781,643 - AO356_29165 0.53 +1.0
6,782,105 + +0.3
6,782,110 - -0.0

Or see this region's nucleotide sequence