Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25690

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25680 and AO356_25685 are separated by 15 nucleotidesAO356_25685 and AO356_25690 are separated by 319 nucleotidesAO356_25690 and AO356_25695 are separated by 208 nucleotides AO356_25680: AO356_25680 - carbon starvation protein A, at 5,807,013 to 5,809,073 _25680 AO356_25685: AO356_25685 - hypothetical protein, at 5,809,089 to 5,809,286 _25685 AO356_25690: AO356_25690 - chemotaxis protein, at 5,809,606 to 5,811,402 _25690 AO356_25695: AO356_25695 - ligand-gated channel, at 5,811,611 to 5,813,734 _25695 Position (kb) 5809 5810 5811 5812Strain fitness (log2 ratio) -2 -1 0 1at 5809.519 kb on - strandat 5809.682 kb on - strandat 5809.721 kb on + strandat 5809.722 kb on - strandat 5809.967 kb on + strand, within AO356_25690at 5809.980 kb on - strand, within AO356_25690at 5810.469 kb on + strand, within AO356_25690at 5810.470 kb on - strand, within AO356_25690at 5810.738 kb on + strand, within AO356_25690at 5811.372 kb on + strandat 5811.381 kb on - strandat 5811.381 kb on - strandat 5811.466 kb on + strandat 5811.495 kb on - strandat 5811.538 kb on + strandat 5811.539 kb on - strandat 5811.634 kb on - strandat 5811.772 kb on + strandat 5811.773 kb on - strandat 5811.810 kb on + strandat 5811.811 kb on - strandat 5812.172 kb on + strand, within AO356_25695at 5812.272 kb on - strand, within AO356_25695at 5812.284 kb on - strand, within AO356_25695at 5812.284 kb on - strand, within AO356_25695at 5812.358 kb on + strand, within AO356_25695at 5812.359 kb on - strand, within AO356_25695at 5812.359 kb on - strand, within AO356_25695at 5812.373 kb on + strand, within AO356_25695at 5812.374 kb on - strand, within AO356_25695

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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5,809,519 - -0.6
5,809,682 - -0.2
5,809,721 + -0.8
5,809,722 - +0.3
5,809,967 + AO356_25690 0.20 -0.5
5,809,980 - AO356_25690 0.21 +0.5
5,810,469 + AO356_25690 0.48 -0.3
5,810,470 - AO356_25690 0.48 +0.5
5,810,738 + AO356_25690 0.63 -0.8
5,811,372 + +0.2
5,811,381 - +1.0
5,811,381 - +0.5
5,811,466 + -0.6
5,811,495 - +0.3
5,811,538 + +0.7
5,811,539 - -0.1
5,811,634 - -2.3
5,811,772 + -0.4
5,811,773 - -0.9
5,811,810 + -0.3
5,811,811 - -0.2
5,812,172 + AO356_25695 0.26 +0.4
5,812,272 - AO356_25695 0.31 +0.0
5,812,284 - AO356_25695 0.32 +0.3
5,812,284 - AO356_25695 0.32 -1.1
5,812,358 + AO356_25695 0.35 -0.8
5,812,359 - AO356_25695 0.35 +0.5
5,812,359 - AO356_25695 0.35 -0.3
5,812,373 + AO356_25695 0.36 +0.4
5,812,374 - AO356_25695 0.36 -0.1

Or see this region's nucleotide sequence