Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_21760 and AO356_21765 are separated by 105 nucleotides AO356_21765 and AO356_21770 overlap by 8 nucleotides
AO356_21760: AO356_21760 - oxidoreductase, at 4,871,167 to 4,872,138
_21760
AO356_21765: AO356_21765 - GntR family transcriptional regulator, at 4,872,244 to 4,873,002
_21765
AO356_21770: AO356_21770 - oxidoreductase, at 4,872,995 to 4,874,725
_21770
Position (kb)
4872
4873
4874 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4871.300 kb on - strand, within AO356_21760 at 4871.329 kb on + strand, within AO356_21760 at 4871.377 kb on + strand, within AO356_21760 at 4871.410 kb on + strand, within AO356_21760 at 4871.411 kb on - strand, within AO356_21760 at 4871.411 kb on - strand, within AO356_21760 at 4871.412 kb on + strand, within AO356_21760 at 4871.413 kb on - strand, within AO356_21760 at 4871.502 kb on - strand, within AO356_21760 at 4871.536 kb on + strand, within AO356_21760 at 4871.537 kb on - strand, within AO356_21760 at 4871.676 kb on + strand, within AO356_21760 at 4871.677 kb on - strand, within AO356_21760 at 4871.704 kb on + strand, within AO356_21760 at 4871.704 kb on + strand, within AO356_21760 at 4871.705 kb on - strand, within AO356_21760 at 4871.705 kb on - strand, within AO356_21760 at 4871.803 kb on + strand, within AO356_21760 at 4871.803 kb on + strand, within AO356_21760 at 4871.804 kb on - strand, within AO356_21760 at 4871.970 kb on + strand, within AO356_21760 at 4871.970 kb on + strand, within AO356_21760 at 4872.032 kb on + strand, within AO356_21760 at 4872.032 kb on + strand, within AO356_21760 at 4872.032 kb on + strand, within AO356_21760 at 4872.033 kb on - strand, within AO356_21760 at 4872.158 kb on - strand at 4872.162 kb on + strand at 4872.162 kb on + strand at 4872.162 kb on + strand at 4872.163 kb on - strand at 4872.163 kb on - strand at 4872.163 kb on - strand at 4872.176 kb on + strand at 4872.177 kb on - strand at 4872.276 kb on - strand at 4872.691 kb on + strand, within AO356_21765 at 4872.691 kb on + strand, within AO356_21765 at 4872.931 kb on + strand at 4872.931 kb on + strand at 4872.931 kb on + strand at 4872.932 kb on - strand at 4872.932 kb on - strand at 4872.935 kb on - strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.000 kb on + strand at 4873.001 kb on - strand at 4873.023 kb on - strand at 4873.023 kb on - strand at 4873.208 kb on + strand, within AO356_21770 at 4873.208 kb on + strand, within AO356_21770 at 4873.209 kb on - strand, within AO356_21770 at 4873.262 kb on + strand, within AO356_21770 at 4873.262 kb on + strand, within AO356_21770 at 4873.263 kb on - strand, within AO356_21770 at 4873.263 kb on - strand, within AO356_21770 at 4873.268 kb on + strand, within AO356_21770 at 4873.268 kb on + strand, within AO356_21770 at 4873.268 kb on + strand, within AO356_21770 at 4873.269 kb on - strand, within AO356_21770 at 4873.379 kb on + strand, within AO356_21770 at 4873.379 kb on + strand, within AO356_21770 at 4873.379 kb on + strand, within AO356_21770 at 4873.379 kb on + strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.380 kb on - strand, within AO356_21770 at 4873.635 kb on - strand, within AO356_21770 at 4873.665 kb on - strand, within AO356_21770 at 4873.676 kb on + strand, within AO356_21770 at 4873.739 kb on + strand, within AO356_21770 at 4873.739 kb on + strand, within AO356_21770 at 4873.740 kb on - strand, within AO356_21770 at 4873.760 kb on + strand, within AO356_21770 at 4873.760 kb on + strand, within AO356_21770 at 4873.760 kb on + strand, within AO356_21770 at 4873.760 kb on + strand, within AO356_21770 at 4873.761 kb on - strand, within AO356_21770 at 4873.761 kb on - strand, within AO356_21770 at 4873.761 kb on - strand, within AO356_21770 at 4873.784 kb on + strand, within AO356_21770 at 4873.826 kb on + strand, within AO356_21770 at 4873.827 kb on - strand, within AO356_21770
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 4,871,300 - AO356_21760 0.14 +0.8 4,871,329 + AO356_21760 0.17 +1.0 4,871,377 + AO356_21760 0.22 -0.0 4,871,410 + AO356_21760 0.25 +0.4 4,871,411 - AO356_21760 0.25 +0.1 4,871,411 - AO356_21760 0.25 +0.1 4,871,412 + AO356_21760 0.25 -0.5 4,871,413 - AO356_21760 0.25 +0.4 4,871,502 - AO356_21760 0.34 +0.2 4,871,536 + AO356_21760 0.38 +0.3 4,871,537 - AO356_21760 0.38 -1.9 4,871,676 + AO356_21760 0.52 +0.8 4,871,677 - AO356_21760 0.52 +0.5 4,871,704 + AO356_21760 0.55 -1.0 4,871,704 + AO356_21760 0.55 +0.2 4,871,705 - AO356_21760 0.55 -0.6 4,871,705 - AO356_21760 0.55 -0.2 4,871,803 + AO356_21760 0.65 -1.2 4,871,803 + AO356_21760 0.65 -0.6 4,871,804 - AO356_21760 0.66 +0.0 4,871,970 + AO356_21760 0.83 +0.3 4,871,970 + AO356_21760 0.83 -0.3 4,872,032 + AO356_21760 0.89 +1.2 4,872,032 + AO356_21760 0.89 +0.2 4,872,032 + AO356_21760 0.89 -0.8 4,872,033 - AO356_21760 0.89 -1.3 4,872,158 - +1.0 4,872,162 + -0.6 4,872,162 + +0.8 4,872,162 + +0.4 4,872,163 - -0.3 4,872,163 - -0.0 4,872,163 - +0.5 4,872,176 + +0.5 4,872,177 - -1.0 4,872,276 - -0.9 4,872,691 + AO356_21765 0.59 -0.1 4,872,691 + AO356_21765 0.59 -1.4 4,872,931 + +0.2 4,872,931 + +0.4 4,872,931 + -0.2 4,872,932 - +0.3 4,872,932 - -0.0 4,872,935 - +0.0 4,873,000 + +0.6 4,873,000 + -0.2 4,873,000 + +1.3 4,873,000 + -3.2 4,873,000 + -0.3 4,873,000 + +0.6 4,873,000 + -0.7 4,873,000 + +1.3 4,873,001 - -1.7 4,873,023 - +1.2 4,873,023 - -0.2 4,873,208 + AO356_21770 0.12 +0.3 4,873,208 + AO356_21770 0.12 +0.5 4,873,209 - AO356_21770 0.12 +1.0 4,873,262 + AO356_21770 0.15 +0.9 4,873,262 + AO356_21770 0.15 -0.8 4,873,263 - AO356_21770 0.15 -1.2 4,873,263 - AO356_21770 0.15 +0.9 4,873,268 + AO356_21770 0.16 +0.2 4,873,268 + AO356_21770 0.16 -0.6 4,873,268 + AO356_21770 0.16 +0.7 4,873,269 - AO356_21770 0.16 -0.9 4,873,379 + AO356_21770 0.22 +1.9 4,873,379 + AO356_21770 0.22 +0.3 4,873,379 + AO356_21770 0.22 -0.7 4,873,379 + AO356_21770 0.22 +0.2 4,873,380 - AO356_21770 0.22 +0.9 4,873,380 - AO356_21770 0.22 -0.2 4,873,380 - AO356_21770 0.22 +0.4 4,873,380 - AO356_21770 0.22 +0.1 4,873,380 - AO356_21770 0.22 -1.7 4,873,380 - AO356_21770 0.22 +0.0 4,873,635 - AO356_21770 0.37 -0.1 4,873,665 - AO356_21770 0.39 -0.4 4,873,676 + AO356_21770 0.39 +0.5 4,873,739 + AO356_21770 0.43 +0.8 4,873,739 + AO356_21770 0.43 +1.0 4,873,740 - AO356_21770 0.43 -0.7 4,873,760 + AO356_21770 0.44 +0.1 4,873,760 + AO356_21770 0.44 +0.6 4,873,760 + AO356_21770 0.44 -0.2 4,873,760 + AO356_21770 0.44 -0.6 4,873,761 - AO356_21770 0.44 -0.2 4,873,761 - AO356_21770 0.44 +0.9 4,873,761 - AO356_21770 0.44 +0.2 4,873,784 + AO356_21770 0.46 -0.2 4,873,826 + AO356_21770 0.48 +0.5 4,873,827 - AO356_21770 0.48 -1.0
Or see this region's nucleotide sequence