Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_21765

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_21760 and AO356_21765 are separated by 105 nucleotidesAO356_21765 and AO356_21770 overlap by 8 nucleotides AO356_21760: AO356_21760 - oxidoreductase, at 4,871,167 to 4,872,138 _21760 AO356_21765: AO356_21765 - GntR family transcriptional regulator, at 4,872,244 to 4,873,002 _21765 AO356_21770: AO356_21770 - oxidoreductase, at 4,872,995 to 4,874,725 _21770 Position (kb) 4872 4873 4874Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4871.300 kb on - strand, within AO356_21760at 4871.329 kb on + strand, within AO356_21760at 4871.377 kb on + strand, within AO356_21760at 4871.410 kb on + strand, within AO356_21760at 4871.411 kb on - strand, within AO356_21760at 4871.411 kb on - strand, within AO356_21760at 4871.412 kb on + strand, within AO356_21760at 4871.413 kb on - strand, within AO356_21760at 4871.502 kb on - strand, within AO356_21760at 4871.536 kb on + strand, within AO356_21760at 4871.537 kb on - strand, within AO356_21760at 4871.676 kb on + strand, within AO356_21760at 4871.677 kb on - strand, within AO356_21760at 4871.704 kb on + strand, within AO356_21760at 4871.704 kb on + strand, within AO356_21760at 4871.705 kb on - strand, within AO356_21760at 4871.705 kb on - strand, within AO356_21760at 4871.803 kb on + strand, within AO356_21760at 4871.803 kb on + strand, within AO356_21760at 4871.804 kb on - strand, within AO356_21760at 4871.970 kb on + strand, within AO356_21760at 4871.970 kb on + strand, within AO356_21760at 4872.032 kb on + strand, within AO356_21760at 4872.032 kb on + strand, within AO356_21760at 4872.032 kb on + strand, within AO356_21760at 4872.033 kb on - strand, within AO356_21760at 4872.158 kb on - strandat 4872.162 kb on + strandat 4872.162 kb on + strandat 4872.162 kb on + strandat 4872.163 kb on - strandat 4872.163 kb on - strandat 4872.163 kb on - strandat 4872.176 kb on + strandat 4872.177 kb on - strandat 4872.276 kb on - strandat 4872.691 kb on + strand, within AO356_21765at 4872.691 kb on + strand, within AO356_21765at 4872.931 kb on + strandat 4872.931 kb on + strandat 4872.931 kb on + strandat 4872.932 kb on - strandat 4872.932 kb on - strandat 4872.935 kb on - strandat 4873.000 kb on + strandat 4873.000 kb on + strandat 4873.000 kb on + strandat 4873.000 kb on + strandat 4873.000 kb on + strandat 4873.000 kb on + strandat 4873.000 kb on + strandat 4873.000 kb on + strandat 4873.001 kb on - strandat 4873.023 kb on - strandat 4873.023 kb on - strandat 4873.208 kb on + strand, within AO356_21770at 4873.208 kb on + strand, within AO356_21770at 4873.209 kb on - strand, within AO356_21770at 4873.262 kb on + strand, within AO356_21770at 4873.262 kb on + strand, within AO356_21770at 4873.263 kb on - strand, within AO356_21770at 4873.263 kb on - strand, within AO356_21770at 4873.268 kb on + strand, within AO356_21770at 4873.268 kb on + strand, within AO356_21770at 4873.268 kb on + strand, within AO356_21770at 4873.269 kb on - strand, within AO356_21770at 4873.379 kb on + strand, within AO356_21770at 4873.379 kb on + strand, within AO356_21770at 4873.379 kb on + strand, within AO356_21770at 4873.379 kb on + strand, within AO356_21770at 4873.380 kb on - strand, within AO356_21770at 4873.380 kb on - strand, within AO356_21770at 4873.380 kb on - strand, within AO356_21770at 4873.380 kb on - strand, within AO356_21770at 4873.380 kb on - strand, within AO356_21770at 4873.380 kb on - strand, within AO356_21770at 4873.635 kb on - strand, within AO356_21770at 4873.665 kb on - strand, within AO356_21770at 4873.676 kb on + strand, within AO356_21770at 4873.739 kb on + strand, within AO356_21770at 4873.739 kb on + strand, within AO356_21770at 4873.740 kb on - strand, within AO356_21770at 4873.760 kb on + strand, within AO356_21770at 4873.760 kb on + strand, within AO356_21770at 4873.760 kb on + strand, within AO356_21770at 4873.760 kb on + strand, within AO356_21770at 4873.761 kb on - strand, within AO356_21770at 4873.761 kb on - strand, within AO356_21770at 4873.761 kb on - strand, within AO356_21770at 4873.784 kb on + strand, within AO356_21770at 4873.826 kb on + strand, within AO356_21770at 4873.827 kb on - strand, within AO356_21770

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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4,871,300 - AO356_21760 0.14 +0.8
4,871,329 + AO356_21760 0.17 +1.0
4,871,377 + AO356_21760 0.22 -0.0
4,871,410 + AO356_21760 0.25 +0.4
4,871,411 - AO356_21760 0.25 +0.1
4,871,411 - AO356_21760 0.25 +0.1
4,871,412 + AO356_21760 0.25 -0.5
4,871,413 - AO356_21760 0.25 +0.4
4,871,502 - AO356_21760 0.34 +0.2
4,871,536 + AO356_21760 0.38 +0.3
4,871,537 - AO356_21760 0.38 -1.9
4,871,676 + AO356_21760 0.52 +0.8
4,871,677 - AO356_21760 0.52 +0.5
4,871,704 + AO356_21760 0.55 -1.0
4,871,704 + AO356_21760 0.55 +0.2
4,871,705 - AO356_21760 0.55 -0.6
4,871,705 - AO356_21760 0.55 -0.2
4,871,803 + AO356_21760 0.65 -1.2
4,871,803 + AO356_21760 0.65 -0.6
4,871,804 - AO356_21760 0.66 +0.0
4,871,970 + AO356_21760 0.83 +0.3
4,871,970 + AO356_21760 0.83 -0.3
4,872,032 + AO356_21760 0.89 +1.2
4,872,032 + AO356_21760 0.89 +0.2
4,872,032 + AO356_21760 0.89 -0.8
4,872,033 - AO356_21760 0.89 -1.3
4,872,158 - +1.0
4,872,162 + -0.6
4,872,162 + +0.8
4,872,162 + +0.4
4,872,163 - -0.3
4,872,163 - -0.0
4,872,163 - +0.5
4,872,176 + +0.5
4,872,177 - -1.0
4,872,276 - -0.9
4,872,691 + AO356_21765 0.59 -0.1
4,872,691 + AO356_21765 0.59 -1.4
4,872,931 + +0.2
4,872,931 + +0.4
4,872,931 + -0.2
4,872,932 - +0.3
4,872,932 - -0.0
4,872,935 - +0.0
4,873,000 + +0.6
4,873,000 + -0.2
4,873,000 + +1.3
4,873,000 + -3.2
4,873,000 + -0.3
4,873,000 + +0.6
4,873,000 + -0.7
4,873,000 + +1.3
4,873,001 - -1.7
4,873,023 - +1.2
4,873,023 - -0.2
4,873,208 + AO356_21770 0.12 +0.3
4,873,208 + AO356_21770 0.12 +0.5
4,873,209 - AO356_21770 0.12 +1.0
4,873,262 + AO356_21770 0.15 +0.9
4,873,262 + AO356_21770 0.15 -0.8
4,873,263 - AO356_21770 0.15 -1.2
4,873,263 - AO356_21770 0.15 +0.9
4,873,268 + AO356_21770 0.16 +0.2
4,873,268 + AO356_21770 0.16 -0.6
4,873,268 + AO356_21770 0.16 +0.7
4,873,269 - AO356_21770 0.16 -0.9
4,873,379 + AO356_21770 0.22 +1.9
4,873,379 + AO356_21770 0.22 +0.3
4,873,379 + AO356_21770 0.22 -0.7
4,873,379 + AO356_21770 0.22 +0.2
4,873,380 - AO356_21770 0.22 +0.9
4,873,380 - AO356_21770 0.22 -0.2
4,873,380 - AO356_21770 0.22 +0.4
4,873,380 - AO356_21770 0.22 +0.1
4,873,380 - AO356_21770 0.22 -1.7
4,873,380 - AO356_21770 0.22 +0.0
4,873,635 - AO356_21770 0.37 -0.1
4,873,665 - AO356_21770 0.39 -0.4
4,873,676 + AO356_21770 0.39 +0.5
4,873,739 + AO356_21770 0.43 +0.8
4,873,739 + AO356_21770 0.43 +1.0
4,873,740 - AO356_21770 0.43 -0.7
4,873,760 + AO356_21770 0.44 +0.1
4,873,760 + AO356_21770 0.44 +0.6
4,873,760 + AO356_21770 0.44 -0.2
4,873,760 + AO356_21770 0.44 -0.6
4,873,761 - AO356_21770 0.44 -0.2
4,873,761 - AO356_21770 0.44 +0.9
4,873,761 - AO356_21770 0.44 +0.2
4,873,784 + AO356_21770 0.46 -0.2
4,873,826 + AO356_21770 0.48 +0.5
4,873,827 - AO356_21770 0.48 -1.0

Or see this region's nucleotide sequence