Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_07005 and AO356_07010 are separated by 273 nucleotides AO356_07010 and AO356_07015 are separated by 0 nucleotides AO356_07015 and AO356_07020 are separated by 7 nucleotides
AO356_07005: AO356_07005 - ABC transporter ATP-binding protein, at 1,547,629 to 1,548,438
_07005
AO356_07010: AO356_07010 - D-arabinose 5-phosphate isomerase, at 1,548,712 to 1,549,686
_07010
AO356_07015: AO356_07015 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 1,549,687 to 1,550,211
_07015
AO356_07020: AO356_07020 - LPS export ABC transporter periplasmic protein LptC, at 1,550,219 to 1,550,788
_07020
Position (kb)
1548
1549
1550 Strain fitness (log2 ratio)
-2
-1
0
1 at 1547.792 kb on + strand, within AO356_07005 at 1547.792 kb on + strand, within AO356_07005 at 1547.798 kb on + strand, within AO356_07005 at 1547.936 kb on + strand, within AO356_07005 at 1548.419 kb on + strand at 1548.419 kb on + strand at 1548.440 kb on + strand at 1548.440 kb on + strand at 1548.441 kb on - strand at 1548.441 kb on - strand at 1548.441 kb on - strand at 1548.528 kb on + strand at 1548.528 kb on + strand at 1548.528 kb on + strand at 1548.528 kb on + strand at 1548.528 kb on + strand at 1548.528 kb on + strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.529 kb on - strand at 1548.531 kb on - strand at 1548.531 kb on - strand at 1548.531 kb on - strand at 1548.590 kb on + strand at 1548.590 kb on + strand at 1548.590 kb on + strand at 1548.604 kb on + strand at 1548.646 kb on + strand at 1548.646 kb on + strand at 1548.672 kb on + strand at 1548.672 kb on + strand at 1548.674 kb on + strand at 1548.697 kb on + strand at 1548.699 kb on + strand at 1548.699 kb on + strand at 1548.699 kb on + strand at 1548.699 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1549.684 kb on + strand at 1550.218 kb on + strand at 1550.218 kb on + strand at 1550.218 kb on + strand at 1550.654 kb on + strand, within AO356_07020
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 1,547,792 + AO356_07005 0.20 +0.1 1,547,792 + AO356_07005 0.20 -0.3 1,547,798 + AO356_07005 0.21 -0.3 1,547,936 + AO356_07005 0.38 -1.7 1,548,419 + +0.4 1,548,419 + -2.1 1,548,440 + +0.4 1,548,440 + -1.4 1,548,441 - -0.5 1,548,441 - -1.2 1,548,441 - +1.7 1,548,528 + +0.7 1,548,528 + -1.5 1,548,528 + -2.3 1,548,528 + -1.6 1,548,528 + -1.5 1,548,528 + -1.1 1,548,529 - -1.7 1,548,529 - -0.2 1,548,529 - +0.1 1,548,529 - -2.2 1,548,529 - -0.4 1,548,529 - -0.5 1,548,529 - +0.1 1,548,529 - +0.1 1,548,531 - +0.3 1,548,531 - -1.3 1,548,531 - -0.7 1,548,590 + -0.1 1,548,590 + +0.9 1,548,590 + +0.1 1,548,604 + +0.4 1,548,646 + -0.8 1,548,646 + -2.5 1,548,672 + -0.8 1,548,672 + +0.2 1,548,674 + -0.5 1,548,697 + -1.3 1,548,699 + +0.1 1,548,699 + -0.7 1,548,699 + +0.8 1,548,699 + -1.7 1,549,684 + -0.4 1,549,684 + -0.6 1,549,684 + +0.5 1,549,684 + +1.3 1,549,684 + +0.0 1,550,218 + -1.7 1,550,218 + +0.6 1,550,218 + -1.8 1,550,654 + AO356_07020 0.76 -0.3
Or see this region's nucleotide sequence