Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02715 and AO356_02720 overlap by 4 nucleotides AO356_02720 and AO356_02725 overlap by 17 nucleotides AO356_02725 and AO356_02730 are separated by 66 nucleotides
AO356_02715: AO356_02715 - type III secretion effector protein, at 594,508 to 595,377
_02715
AO356_02720: AO356_02720 - type III secretion protein, at 595,374 to 595,829
_02720
AO356_02725: AO356_02725 - ATP synthase, at 595,813 to 597,099
_02725
AO356_02730: AO356_02730 - type III secretion system protein InvA, at 597,166 to 599,217
_02730
Position (kb) 595
596
597
598 Strain fitness (log2 ratio) -1
0
1 at 594.820 kb on + strand, within AO356_02715 at 594.821 kb on - strand, within AO356_02715 at 595.113 kb on + strand, within AO356_02715 at 595.472 kb on - strand, within AO356_02720 at 595.472 kb on - strand, within AO356_02720 at 595.472 kb on - strand, within AO356_02720 at 595.472 kb on - strand, within AO356_02720 at 596.123 kb on + strand, within AO356_02725 at 596.124 kb on - strand, within AO356_02725 at 596.124 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.202 kb on - strand, within AO356_02725 at 596.342 kb on + strand, within AO356_02725 at 597.267 kb on - strand at 597.267 kb on - strand at 597.494 kb on + strand, within AO356_02730 at 597.495 kb on - strand, within AO356_02730 at 597.923 kb on + strand, within AO356_02730 at 597.924 kb on - strand, within AO356_02730 at 598.056 kb on - strand, within AO356_02730
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 594,820 + AO356_02715 0.36 +0.5 594,821 - AO356_02715 0.36 +0.3 595,113 + AO356_02715 0.70 +0.5 595,472 - AO356_02720 0.21 -0.2 595,472 - AO356_02720 0.21 +1.6 595,472 - AO356_02720 0.21 +1.1 595,472 - AO356_02720 0.21 +0.4 596,123 + AO356_02725 0.24 +0.4 596,124 - AO356_02725 0.24 +0.3 596,124 - AO356_02725 0.24 -0.1 596,202 - AO356_02725 0.30 +0.4 596,202 - AO356_02725 0.30 +0.7 596,202 - AO356_02725 0.30 +0.8 596,342 + AO356_02725 0.41 +0.1 597,267 - +0.7 597,267 - -1.3 597,494 + AO356_02730 0.16 +0.0 597,495 - AO356_02730 0.16 +0.6 597,923 + AO356_02730 0.37 -0.1 597,924 - AO356_02730 0.37 +0.3 598,056 - AO356_02730 0.43 -0.5
Or see this region's nucleotide sequence