Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_01755 and AO356_01760 are separated by 422 nucleotides AO356_01760 and AO356_01765 are separated by 58 nucleotides AO356_01765 and AO356_01770 are separated by 41 nucleotides AO356_01770 and AO356_01775 are separated by 281 nucleotides
AO356_01755: AO356_01755 - trigger factor, at 396,502 to 397,812
_01755
AO356_01760: AO356_01760 - tRNA-Leu, at 398,235 to 398,319
_01760
AO356_01765: AO356_01765 - tRNA-His, at 398,378 to 398,453
_01765
AO356_01770: AO356_01770 - tRNA-Arg, at 398,495 to 398,571
_01770
AO356_01775: AO356_01775 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 398,853 to 399,707
_01775
Position (kb) 398
399 Strain fitness (log2 ratio) -2
-1
0
1 at 397.530 kb on + strand, within AO356_01755 at 397.587 kb on - strand, within AO356_01755 at 397.587 kb on - strand, within AO356_01755 at 397.791 kb on + strand at 397.792 kb on - strand at 397.878 kb on + strand at 397.878 kb on + strand at 397.878 kb on + strand at 397.879 kb on - strand at 397.879 kb on - strand at 397.879 kb on - strand at 397.879 kb on - strand at 397.879 kb on - strand at 397.881 kb on + strand at 397.881 kb on + strand at 397.882 kb on - strand at 397.906 kb on - strand at 397.906 kb on - strand at 397.978 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.016 kb on + strand at 398.017 kb on - strand at 398.017 kb on - strand at 398.017 kb on - strand at 398.017 kb on - strand at 398.017 kb on - strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.018 kb on + strand at 398.019 kb on - strand at 398.019 kb on - strand at 398.019 kb on - strand at 398.019 kb on - strand at 398.020 kb on + strand at 398.020 kb on + strand at 398.020 kb on + strand at 398.020 kb on + strand at 398.020 kb on + strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.021 kb on - strand at 398.022 kb on + strand at 398.022 kb on + strand at 398.022 kb on + strand at 398.022 kb on + strand at 398.022 kb on + strand at 398.022 kb on + strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.023 kb on - strand at 398.078 kb on + strand at 398.078 kb on + strand at 398.197 kb on + strand at 398.220 kb on - strand at 398.233 kb on + strand at 398.233 kb on + strand at 398.233 kb on + strand at 398.234 kb on - strand at 398.234 kb on - strand at 398.234 kb on - strand at 398.234 kb on - strand at 398.234 kb on - strand at 398.355 kb on - strand at 398.355 kb on - strand at 398.372 kb on - strand at 398.473 kb on - strand at 398.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 397,530 + AO356_01755 0.78 +0.3 397,587 - AO356_01755 0.83 -0.5 397,587 - AO356_01755 0.83 -0.9 397,791 + +0.5 397,792 - -2.2 397,878 + -1.6 397,878 + -1.2 397,878 + +0.1 397,879 - -1.2 397,879 - +0.7 397,879 - +0.3 397,879 - +0.1 397,879 - -0.5 397,881 + +1.1 397,881 + -0.9 397,882 - -0.1 397,906 - -0.3 397,906 - -0.7 397,978 + -0.0 398,016 + -0.6 398,016 + +0.7 398,016 + -0.7 398,016 + -1.1 398,016 + +1.1 398,016 + -0.4 398,016 + +0.1 398,016 + -0.0 398,017 - -0.2 398,017 - +0.3 398,017 - +0.8 398,017 - +0.3 398,017 - -0.3 398,018 + +0.8 398,018 + +0.2 398,018 + +0.6 398,018 + -1.9 398,018 + +1.4 398,018 + -0.1 398,018 + +0.8 398,018 + -1.6 398,019 - -0.2 398,019 - -0.2 398,019 - -0.7 398,019 - +0.2 398,020 + -0.7 398,020 + +0.4 398,020 + -0.1 398,020 + +0.5 398,020 + +0.0 398,021 - +0.5 398,021 - +0.2 398,021 - +1.1 398,021 - +1.2 398,021 - +0.1 398,021 - +1.5 398,021 - +0.1 398,021 - -0.3 398,021 - +0.1 398,021 - -1.1 398,022 + -0.7 398,022 + +0.6 398,022 + -0.7 398,022 + +0.5 398,022 + +0.2 398,022 + -0.5 398,023 - +0.4 398,023 - +0.1 398,023 - -1.1 398,023 - +0.4 398,023 - +0.5 398,023 - +0.5 398,023 - +0.3 398,023 - -0.0 398,023 - +0.3 398,078 + -1.1 398,078 + +0.5 398,197 + -0.8 398,220 - +0.8 398,233 + -0.2 398,233 + -0.4 398,233 + -1.3 398,234 - +0.8 398,234 - -0.4 398,234 - +1.2 398,234 - -0.1 398,234 - -0.3 398,355 - +0.6 398,355 - +1.1 398,372 - +0.1 398,473 - -0.2 398,606 - -1.7
Or see this region's nucleotide sequence