Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00775

Experiment: Minimal media pH9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_00770 and AO356_00775 are separated by 12 nucleotidesAO356_00775 and AO356_00780 are separated by 32 nucleotidesAO356_00780 and AO356_00785 overlap by 4 nucleotides AO356_00770: AO356_00770 - glycosyl transferase, at 173,481 to 175,937 _00770 AO356_00775: AO356_00775 - glycosyl transferase family 2, at 175,950 to 176,972 _00775 AO356_00780: AO356_00780 - methyltransferase, at 177,005 to 177,751 _00780 AO356_00785: AO356_00785 - polysaccharide synthesis protein GtrA, at 177,748 to 178,155 _00785 Position (kb) 175 176 177Strain fitness (log2 ratio) -1 0 1 2at 175.008 kb on + strand, within AO356_00770at 175.018 kb on - strand, within AO356_00770at 175.018 kb on - strand, within AO356_00770at 175.018 kb on - strand, within AO356_00770at 175.158 kb on + strand, within AO356_00770at 175.158 kb on + strand, within AO356_00770at 175.158 kb on + strand, within AO356_00770at 175.158 kb on + strand, within AO356_00770at 175.161 kb on + strand, within AO356_00770at 175.161 kb on + strand, within AO356_00770at 175.161 kb on + strand, within AO356_00770at 175.213 kb on - strand, within AO356_00770at 175.268 kb on + strand, within AO356_00770at 175.269 kb on - strand, within AO356_00770at 175.335 kb on + strand, within AO356_00770at 175.335 kb on + strand, within AO356_00770at 175.501 kb on - strand, within AO356_00770at 175.615 kb on - strand, within AO356_00770at 175.615 kb on - strand, within AO356_00770at 175.615 kb on - strand, within AO356_00770at 175.695 kb on + strandat 175.695 kb on + strandat 175.696 kb on - strandat 175.785 kb on - strandat 175.878 kb on + strandat 175.878 kb on + strandat 175.879 kb on - strandat 175.879 kb on - strandat 175.879 kb on - strandat 175.879 kb on - strandat 176.050 kb on + strandat 176.050 kb on + strandat 176.051 kb on - strandat 176.051 kb on - strandat 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.073 kb on + strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.074 kb on - strand, within AO356_00775at 176.129 kb on + strand, within AO356_00775at 176.129 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.316 kb on + strand, within AO356_00775at 176.317 kb on - strand, within AO356_00775at 176.682 kb on + strand, within AO356_00775at 176.682 kb on + strand, within AO356_00775at 176.683 kb on - strand, within AO356_00775at 176.683 kb on - strand, within AO356_00775at 176.683 kb on - strand, within AO356_00775at 176.688 kb on + strand, within AO356_00775at 176.688 kb on + strand, within AO356_00775at 176.688 kb on + strand, within AO356_00775at 176.689 kb on - strand, within AO356_00775at 176.689 kb on - strand, within AO356_00775at 176.689 kb on - strand, within AO356_00775at 176.691 kb on + strand, within AO356_00775at 176.772 kb on + strand, within AO356_00775at 176.773 kb on - strand, within AO356_00775at 176.781 kb on + strand, within AO356_00775at 176.931 kb on - strandat 177.122 kb on + strand, within AO356_00780at 177.287 kb on + strand, within AO356_00780at 177.287 kb on + strand, within AO356_00780at 177.288 kb on - strand, within AO356_00780at 177.417 kb on - strand, within AO356_00780at 177.515 kb on + strand, within AO356_00780at 177.516 kb on - strand, within AO356_00780at 177.600 kb on - strand, within AO356_00780at 177.642 kb on + strand, within AO356_00780at 177.787 kb on + strandat 177.788 kb on - strandat 177.828 kb on - strand, within AO356_00785at 177.956 kb on - strand, within AO356_00785at 177.956 kb on - strand, within AO356_00785at 177.956 kb on - strand, within AO356_00785

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Per-strain Table

Position Strand Gene LocusTag Fraction Minimal media pH9
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175,008 + AO356_00770 0.62 +0.6
175,018 - AO356_00770 0.63 -0.4
175,018 - AO356_00770 0.63 -0.5
175,018 - AO356_00770 0.63 +0.3
175,158 + AO356_00770 0.68 +0.9
175,158 + AO356_00770 0.68 -0.6
175,158 + AO356_00770 0.68 -0.1
175,158 + AO356_00770 0.68 -0.8
175,161 + AO356_00770 0.68 +0.7
175,161 + AO356_00770 0.68 -0.6
175,161 + AO356_00770 0.68 +0.4
175,213 - AO356_00770 0.70 +0.5
175,268 + AO356_00770 0.73 +0.4
175,269 - AO356_00770 0.73 +0.3
175,335 + AO356_00770 0.75 -0.5
175,335 + AO356_00770 0.75 +0.7
175,501 - AO356_00770 0.82 +0.6
175,615 - AO356_00770 0.87 -1.3
175,615 - AO356_00770 0.87 +1.0
175,615 - AO356_00770 0.87 +0.3
175,695 + +0.1
175,695 + -1.4
175,696 - +0.6
175,785 - -0.8
175,878 + +0.0
175,878 + +0.4
175,879 - +0.2
175,879 - -0.4
175,879 - -0.1
175,879 - +0.3
176,050 + -0.8
176,050 + -1.3
176,051 - +0.1
176,051 - -0.4
176,073 + AO356_00775 0.12 -0.1
176,073 + AO356_00775 0.12 -0.1
176,073 + AO356_00775 0.12 +0.9
176,073 + AO356_00775 0.12 -0.9
176,073 + AO356_00775 0.12 -0.1
176,073 + AO356_00775 0.12 -0.2
176,073 + AO356_00775 0.12 -0.9
176,073 + AO356_00775 0.12 -0.3
176,074 - AO356_00775 0.12 +2.2
176,074 - AO356_00775 0.12 -0.2
176,074 - AO356_00775 0.12 +1.0
176,074 - AO356_00775 0.12 -1.5
176,074 - AO356_00775 0.12 +0.2
176,074 - AO356_00775 0.12 +0.5
176,074 - AO356_00775 0.12 -0.4
176,129 + AO356_00775 0.17 -0.3
176,129 + AO356_00775 0.17 +0.3
176,316 + AO356_00775 0.36 -1.3
176,316 + AO356_00775 0.36 -0.1
176,316 + AO356_00775 0.36 -0.4
176,316 + AO356_00775 0.36 +0.8
176,316 + AO356_00775 0.36 -0.2
176,316 + AO356_00775 0.36 +0.5
176,316 + AO356_00775 0.36 -0.7
176,317 - AO356_00775 0.36 +0.2
176,682 + AO356_00775 0.72 -0.0
176,682 + AO356_00775 0.72 +0.0
176,683 - AO356_00775 0.72 +0.1
176,683 - AO356_00775 0.72 +0.6
176,683 - AO356_00775 0.72 +0.0
176,688 + AO356_00775 0.72 +0.9
176,688 + AO356_00775 0.72 +0.6
176,688 + AO356_00775 0.72 -0.1
176,689 - AO356_00775 0.72 +0.7
176,689 - AO356_00775 0.72 -1.0
176,689 - AO356_00775 0.72 -0.5
176,691 + AO356_00775 0.72 -1.0
176,772 + AO356_00775 0.80 +2.0
176,773 - AO356_00775 0.80 +0.8
176,781 + AO356_00775 0.81 -0.1
176,931 - -0.5
177,122 + AO356_00780 0.16 -1.1
177,287 + AO356_00780 0.38 -0.6
177,287 + AO356_00780 0.38 -1.7
177,288 - AO356_00780 0.38 -0.2
177,417 - AO356_00780 0.55 -0.1
177,515 + AO356_00780 0.68 +0.4
177,516 - AO356_00780 0.68 -0.4
177,600 - AO356_00780 0.80 -0.3
177,642 + AO356_00780 0.85 +0.0
177,787 + +0.1
177,788 - -1.6
177,828 - AO356_00785 0.20 -0.1
177,956 - AO356_00785 0.51 +0.2
177,956 - AO356_00785 0.51 +0.6
177,956 - AO356_00785 0.51 -0.8

Or see this region's nucleotide sequence