Experiment: Minimal media pH9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00630 and AO356_00635 are separated by 83 nucleotides AO356_00635 and AO356_00640 are separated by 163 nucleotides AO356_00640 and AO356_00645 are separated by 144 nucleotides
AO356_00630: AO356_00630 - ferredoxin, at 135,226 to 136,362
_00630
AO356_00635: AO356_00635 - phenylacetic acid degradation protein, at 136,446 to 136,886
_00635
AO356_00640: AO356_00640 - TetR family transcriptional regulator, at 137,050 to 137,670
_00640
AO356_00645: AO356_00645 - phenol degradation protein meta, at 137,815 to 138,807
_00645
Position (kb) 136
137 Strain fitness (log2 ratio) -1
0
1 at 135.487 kb on + strand, within AO356_00630 at 135.487 kb on + strand, within AO356_00630 at 135.488 kb on - strand, within AO356_00630 at 135.665 kb on - strand, within AO356_00630 at 135.665 kb on - strand, within AO356_00630 at 135.967 kb on + strand, within AO356_00630 at 135.968 kb on - strand, within AO356_00630 at 136.021 kb on + strand, within AO356_00630 at 136.360 kb on + strand at 136.361 kb on - strand at 136.447 kb on + strand at 136.458 kb on + strand at 136.458 kb on + strand at 136.603 kb on + strand, within AO356_00635 at 136.810 kb on + strand, within AO356_00635 at 136.811 kb on - strand, within AO356_00635 at 136.833 kb on - strand, within AO356_00635 at 136.833 kb on - strand, within AO356_00635 at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.865 kb on - strand at 136.931 kb on - strand at 137.019 kb on + strand at 137.020 kb on - strand at 137.020 kb on - strand at 137.020 kb on - strand at 137.153 kb on + strand, within AO356_00640 at 137.154 kb on - strand, within AO356_00640 at 137.154 kb on - strand, within AO356_00640 at 137.212 kb on + strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.254 kb on + strand, within AO356_00640 at 137.255 kb on - strand, within AO356_00640 at 137.255 kb on - strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.297 kb on - strand, within AO356_00640 at 137.297 kb on - strand, within AO356_00640 at 137.350 kb on + strand, within AO356_00640 at 137.350 kb on + strand, within AO356_00640 at 137.618 kb on - strand at 137.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Minimal media pH9 remove 135,487 + AO356_00630 0.23 -0.1 135,487 + AO356_00630 0.23 +0.3 135,488 - AO356_00630 0.23 +1.0 135,665 - AO356_00630 0.39 -0.0 135,665 - AO356_00630 0.39 +1.5 135,967 + AO356_00630 0.65 -0.2 135,968 - AO356_00630 0.65 +0.4 136,021 + AO356_00630 0.70 +1.6 136,360 + -0.1 136,361 - +0.2 136,447 + -0.1 136,458 + -0.0 136,458 + -0.3 136,603 + AO356_00635 0.36 +0.1 136,810 + AO356_00635 0.83 +0.1 136,811 - AO356_00635 0.83 -0.4 136,833 - AO356_00635 0.88 +1.2 136,833 - AO356_00635 0.88 +1.3 136,864 + +0.4 136,864 + +1.2 136,864 + +0.0 136,864 + +0.2 136,864 + +0.0 136,865 - -0.3 136,931 - +0.4 137,019 + -0.9 137,020 - +0.6 137,020 - +0.3 137,020 - +0.6 137,153 + AO356_00640 0.17 -0.0 137,154 - AO356_00640 0.17 -0.9 137,154 - AO356_00640 0.17 +0.4 137,212 + AO356_00640 0.26 +0.4 137,213 - AO356_00640 0.26 -0.0 137,213 - AO356_00640 0.26 -0.5 137,213 - AO356_00640 0.26 -0.8 137,254 + AO356_00640 0.33 -0.3 137,255 - AO356_00640 0.33 +0.1 137,255 - AO356_00640 0.33 -0.8 137,296 + AO356_00640 0.40 -0.5 137,296 + AO356_00640 0.40 +0.1 137,296 + AO356_00640 0.40 -0.6 137,297 - AO356_00640 0.40 -0.5 137,297 - AO356_00640 0.40 -0.3 137,350 + AO356_00640 0.48 +0.8 137,350 + AO356_00640 0.48 -0.8 137,618 - +0.1 137,756 - +1.3
Or see this region's nucleotide sequence