Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_29025

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_29020 and AO353_29025 are separated by 141 nucleotidesAO353_29025 and AO353_29030 are separated by 17 nucleotides AO353_29020: AO353_29020 - amidohydrolase, at 6,306,925 to 6,308,094 _29020 AO353_29025: AO353_29025 - LysR family transcriptional regulator, at 6,308,236 to 6,309,189 _29025 AO353_29030: AO353_29030 - GntR family transcriptional regulator, at 6,309,207 to 6,309,917 _29030 Position (kb) 6308 6309 6310Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 6307.318 kb on + strand, within AO353_29020at 6307.319 kb on - strand, within AO353_29020at 6307.486 kb on - strand, within AO353_29020at 6307.486 kb on - strand, within AO353_29020at 6307.565 kb on + strand, within AO353_29020at 6307.743 kb on - strand, within AO353_29020at 6307.743 kb on - strand, within AO353_29020at 6307.770 kb on + strand, within AO353_29020at 6307.771 kb on - strand, within AO353_29020at 6307.820 kb on + strand, within AO353_29020at 6307.820 kb on + strand, within AO353_29020at 6307.821 kb on - strand, within AO353_29020at 6307.821 kb on - strand, within AO353_29020at 6308.025 kb on + strandat 6308.026 kb on - strandat 6308.116 kb on + strandat 6308.116 kb on + strandat 6308.116 kb on + strandat 6308.117 kb on - strandat 6308.117 kb on - strandat 6308.117 kb on - strandat 6308.117 kb on - strandat 6308.161 kb on + strandat 6308.161 kb on + strandat 6308.175 kb on + strandat 6308.252 kb on + strandat 6308.252 kb on + strandat 6308.252 kb on + strandat 6308.252 kb on + strandat 6308.253 kb on - strandat 6308.253 kb on - strandat 6308.253 kb on - strandat 6308.253 kb on - strandat 6308.253 kb on - strandat 6308.253 kb on - strandat 6308.679 kb on + strand, within AO353_29025at 6308.818 kb on + strand, within AO353_29025at 6308.819 kb on - strand, within AO353_29025at 6308.952 kb on + strand, within AO353_29025at 6308.952 kb on + strand, within AO353_29025at 6308.952 kb on + strand, within AO353_29025at 6308.952 kb on + strand, within AO353_29025at 6308.953 kb on - strand, within AO353_29025at 6308.953 kb on - strand, within AO353_29025at 6308.953 kb on - strand, within AO353_29025at 6309.037 kb on - strand, within AO353_29025at 6309.037 kb on - strand, within AO353_29025at 6309.185 kb on + strandat 6309.185 kb on + strandat 6309.185 kb on + strandat 6309.186 kb on - strandat 6309.193 kb on - strandat 6309.221 kb on + strandat 6309.221 kb on + strandat 6309.221 kb on + strandat 6309.221 kb on + strandat 6309.387 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.409 kb on + strand, within AO353_29030at 6309.410 kb on - strand, within AO353_29030at 6309.410 kb on - strand, within AO353_29030at 6309.410 kb on - strand, within AO353_29030at 6309.410 kb on - strand, within AO353_29030at 6309.410 kb on - strand, within AO353_29030at 6309.410 kb on - strand, within AO353_29030at 6309.410 kb on - strand, within AO353_29030at 6309.410 kb on - strand, within AO353_29030at 6309.410 kb on - strand, within AO353_29030at 6309.410 kb on - strand, within AO353_29030at 6309.427 kb on + strand, within AO353_29030at 6309.427 kb on + strand, within AO353_29030at 6309.427 kb on + strand, within AO353_29030at 6309.427 kb on + strand, within AO353_29030at 6309.427 kb on + strand, within AO353_29030at 6309.427 kb on + strand, within AO353_29030at 6309.427 kb on + strand, within AO353_29030at 6309.428 kb on - strand, within AO353_29030at 6309.428 kb on - strand, within AO353_29030at 6309.428 kb on - strand, within AO353_29030at 6309.428 kb on - strand, within AO353_29030at 6309.428 kb on - strand, within AO353_29030at 6309.428 kb on - strand, within AO353_29030at 6309.428 kb on - strand, within AO353_29030at 6309.428 kb on - strand, within AO353_29030at 6309.428 kb on - strand, within AO353_29030at 6309.431 kb on + strand, within AO353_29030at 6309.431 kb on + strand, within AO353_29030at 6309.432 kb on - strand, within AO353_29030at 6309.432 kb on - strand, within AO353_29030at 6309.514 kb on + strand, within AO353_29030at 6309.515 kb on - strand, within AO353_29030at 6309.950 kb on + strandat 6309.950 kb on + strandat 6309.951 kb on - strandat 6309.951 kb on - strandat 6309.951 kb on - strandat 6309.954 kb on - strandat 6309.962 kb on + strandat 6309.962 kb on + strandat 6309.963 kb on - strandat 6309.963 kb on - strandat 6309.963 kb on - strandat 6309.963 kb on - strandat 6309.963 kb on - strandat 6310.027 kb on + strandat 6310.027 kb on + strandat 6310.027 kb on + strandat 6310.177 kb on - strandat 6310.185 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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6,307,318 + AO353_29020 0.34 -1.0
6,307,319 - AO353_29020 0.34 -0.5
6,307,486 - AO353_29020 0.48 -1.0
6,307,486 - AO353_29020 0.48 +0.9
6,307,565 + AO353_29020 0.55 -1.3
6,307,743 - AO353_29020 0.70 -0.8
6,307,743 - AO353_29020 0.70 +0.7
6,307,770 + AO353_29020 0.72 +0.1
6,307,771 - AO353_29020 0.72 -0.2
6,307,820 + AO353_29020 0.76 -0.3
6,307,820 + AO353_29020 0.76 -0.9
6,307,821 - AO353_29020 0.77 +4.1
6,307,821 - AO353_29020 0.77 -1.0
6,308,025 + +1.9
6,308,026 - +1.3
6,308,116 + +0.5
6,308,116 + +0.6
6,308,116 + -0.8
6,308,117 - -0.1
6,308,117 - -0.8
6,308,117 - -0.4
6,308,117 - -0.7
6,308,161 + -0.6
6,308,161 + -0.7
6,308,175 + -0.0
6,308,252 + -1.5
6,308,252 + +1.0
6,308,252 + -0.5
6,308,252 + +1.1
6,308,253 - +0.5
6,308,253 - +2.0
6,308,253 - +0.4
6,308,253 - +0.1
6,308,253 - -0.7
6,308,253 - -0.5
6,308,679 + AO353_29025 0.46 -0.2
6,308,818 + AO353_29025 0.61 -0.1
6,308,819 - AO353_29025 0.61 +0.9
6,308,952 + AO353_29025 0.75 +2.6
6,308,952 + AO353_29025 0.75 +1.0
6,308,952 + AO353_29025 0.75 -1.7
6,308,952 + AO353_29025 0.75 +1.3
6,308,953 - AO353_29025 0.75 -0.7
6,308,953 - AO353_29025 0.75 +0.9
6,308,953 - AO353_29025 0.75 -0.0
6,309,037 - AO353_29025 0.84 +0.4
6,309,037 - AO353_29025 0.84 +0.5
6,309,185 + -0.9
6,309,185 + +0.1
6,309,185 + +0.4
6,309,186 - +0.4
6,309,193 - +0.5
6,309,221 + -1.6
6,309,221 + -1.4
6,309,221 + -0.1
6,309,221 + +0.6
6,309,387 + AO353_29030 0.25 +1.8
6,309,409 + AO353_29030 0.28 +0.9
6,309,409 + AO353_29030 0.28 -0.9
6,309,409 + AO353_29030 0.28 +0.2
6,309,409 + AO353_29030 0.28 -0.2
6,309,409 + AO353_29030 0.28 -1.9
6,309,409 + AO353_29030 0.28 -0.5
6,309,409 + AO353_29030 0.28 +0.1
6,309,409 + AO353_29030 0.28 +0.7
6,309,409 + AO353_29030 0.28 +0.7
6,309,409 + AO353_29030 0.28 +0.3
6,309,409 + AO353_29030 0.28 +0.5
6,309,409 + AO353_29030 0.28 -1.7
6,309,410 - AO353_29030 0.29 -0.2
6,309,410 - AO353_29030 0.29 +0.6
6,309,410 - AO353_29030 0.29 -1.5
6,309,410 - AO353_29030 0.29 +0.3
6,309,410 - AO353_29030 0.29 +0.0
6,309,410 - AO353_29030 0.29 -0.4
6,309,410 - AO353_29030 0.29 -0.7
6,309,410 - AO353_29030 0.29 -0.2
6,309,410 - AO353_29030 0.29 +1.9
6,309,410 - AO353_29030 0.29 +0.3
6,309,427 + AO353_29030 0.31 +0.7
6,309,427 + AO353_29030 0.31 +0.0
6,309,427 + AO353_29030 0.31 -1.5
6,309,427 + AO353_29030 0.31 -1.3
6,309,427 + AO353_29030 0.31 -0.6
6,309,427 + AO353_29030 0.31 +1.3
6,309,427 + AO353_29030 0.31 +0.2
6,309,428 - AO353_29030 0.31 -0.9
6,309,428 - AO353_29030 0.31 +0.8
6,309,428 - AO353_29030 0.31 -0.1
6,309,428 - AO353_29030 0.31 -0.5
6,309,428 - AO353_29030 0.31 -0.1
6,309,428 - AO353_29030 0.31 +0.9
6,309,428 - AO353_29030 0.31 -1.6
6,309,428 - AO353_29030 0.31 +0.3
6,309,428 - AO353_29030 0.31 +0.5
6,309,431 + AO353_29030 0.32 -0.2
6,309,431 + AO353_29030 0.32 +1.3
6,309,432 - AO353_29030 0.32 +0.6
6,309,432 - AO353_29030 0.32 -0.5
6,309,514 + AO353_29030 0.43 +1.1
6,309,515 - AO353_29030 0.43 -0.3
6,309,950 + -0.1
6,309,950 + +0.7
6,309,951 - +0.2
6,309,951 - +0.1
6,309,951 - +0.3
6,309,954 - +0.7
6,309,962 + -1.0
6,309,962 + -2.2
6,309,963 - -0.5
6,309,963 - +0.3
6,309,963 - -0.9
6,309,963 - -0.7
6,309,963 - +1.3
6,310,027 + -0.0
6,310,027 + -0.7
6,310,027 + -0.7
6,310,177 - +1.4
6,310,185 - -0.4

Or see this region's nucleotide sequence