Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_26030

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_26015 and AO353_26020 are separated by 134 nucleotidesAO353_26020 and AO353_26025 are separated by 89 nucleotidesAO353_26025 and AO353_26030 are separated by 153 nucleotidesAO353_26030 and AO353_26035 are separated by 92 nucleotides AO353_26015: AO353_26015 - hypothetical protein, at 5,732,737 to 5,732,994 _26015 AO353_26020: AO353_26020 - hypothetical protein, at 5,733,129 to 5,733,389 _26020 AO353_26025: AO353_26025 - hypothetical protein, at 5,733,479 to 5,733,694 _26025 AO353_26030: AO353_26030 - NAD(P)H dehydrogenase, at 5,733,848 to 5,734,468 _26030 AO353_26035: AO353_26035 - TetR family transcriptional regulator, at 5,734,561 to 5,735,208 _26035 Position (kb) 5733 5734 5735Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5732.893 kb on + strand, within AO353_26015at 5733.027 kb on - strandat 5733.041 kb on + strandat 5733.048 kb on - strandat 5733.224 kb on + strand, within AO353_26020at 5733.350 kb on - strand, within AO353_26020at 5733.401 kb on - strandat 5733.421 kb on - strandat 5733.435 kb on + strandat 5733.435 kb on + strandat 5733.435 kb on + strandat 5733.435 kb on + strandat 5733.436 kb on - strandat 5733.436 kb on - strandat 5733.436 kb on - strandat 5733.511 kb on + strand, within AO353_26025at 5733.511 kb on + strand, within AO353_26025at 5733.511 kb on + strand, within AO353_26025at 5733.511 kb on + strand, within AO353_26025at 5733.511 kb on + strand, within AO353_26025at 5733.511 kb on + strand, within AO353_26025at 5733.511 kb on + strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.512 kb on - strand, within AO353_26025at 5733.641 kb on - strand, within AO353_26025at 5733.667 kb on + strand, within AO353_26025at 5733.667 kb on + strand, within AO353_26025at 5733.667 kb on + strand, within AO353_26025at 5733.668 kb on - strand, within AO353_26025at 5733.728 kb on - strandat 5733.728 kb on - strandat 5733.728 kb on - strandat 5733.728 kb on - strandat 5733.728 kb on - strandat 5733.729 kb on + strandat 5733.730 kb on - strandat 5733.841 kb on + strandat 5733.841 kb on + strandat 5733.841 kb on + strandat 5733.841 kb on + strandat 5733.841 kb on + strandat 5733.842 kb on - strandat 5733.842 kb on - strandat 5733.842 kb on - strandat 5733.842 kb on - strandat 5733.842 kb on - strandat 5733.842 kb on - strandat 5733.842 kb on - strandat 5733.842 kb on - strandat 5733.851 kb on + strandat 5733.851 kb on + strandat 5733.851 kb on + strandat 5733.852 kb on - strandat 5733.852 kb on - strandat 5733.852 kb on - strandat 5733.854 kb on + strandat 5733.855 kb on - strandat 5733.855 kb on - strandat 5733.855 kb on - strandat 5733.883 kb on + strandat 5733.883 kb on + strandat 5733.883 kb on + strandat 5733.884 kb on - strandat 5733.884 kb on - strandat 5733.886 kb on + strandat 5733.886 kb on + strandat 5733.886 kb on + strandat 5733.886 kb on + strandat 5733.887 kb on - strandat 5733.887 kb on - strandat 5733.890 kb on + strandat 5733.890 kb on + strandat 5733.890 kb on + strandat 5733.891 kb on - strandat 5733.891 kb on - strandat 5733.891 kb on - strandat 5733.990 kb on + strand, within AO353_26030at 5733.991 kb on - strandat 5734.035 kb on + strand, within AO353_26030at 5734.036 kb on - strand, within AO353_26030at 5734.050 kb on + strand, within AO353_26030at 5734.050 kb on + strand, within AO353_26030at 5734.051 kb on - strand, within AO353_26030at 5734.051 kb on - strand, within AO353_26030at 5734.051 kb on - strand, within AO353_26030at 5734.051 kb on - strand, within AO353_26030at 5734.051 kb on - strand, within AO353_26030at 5734.051 kb on - strand, within AO353_26030at 5734.094 kb on + strand, within AO353_26030at 5734.094 kb on + strand, within AO353_26030at 5734.094 kb on + strand, within AO353_26030at 5734.095 kb on - strand, within AO353_26030at 5734.095 kb on - strand, within AO353_26030at 5734.095 kb on - strand, within AO353_26030at 5734.095 kb on - strand, within AO353_26030at 5734.184 kb on + strand, within AO353_26030at 5734.195 kb on + strand, within AO353_26030at 5734.195 kb on + strand, within AO353_26030at 5734.195 kb on + strand, within AO353_26030at 5734.195 kb on + strand, within AO353_26030at 5734.196 kb on - strand, within AO353_26030at 5734.298 kb on + strand, within AO353_26030at 5734.298 kb on + strand, within AO353_26030at 5734.298 kb on + strand, within AO353_26030at 5734.298 kb on + strand, within AO353_26030at 5734.298 kb on + strand, within AO353_26030at 5734.299 kb on - strand, within AO353_26030at 5734.299 kb on - strand, within AO353_26030at 5734.299 kb on - strand, within AO353_26030at 5734.299 kb on - strand, within AO353_26030at 5734.299 kb on - strand, within AO353_26030at 5734.299 kb on - strand, within AO353_26030at 5734.388 kb on + strand, within AO353_26030at 5734.456 kb on + strandat 5734.485 kb on - strandat 5734.512 kb on - strandat 5734.512 kb on - strandat 5734.515 kb on + strandat 5734.554 kb on + strandat 5734.578 kb on + strandat 5734.578 kb on + strandat 5734.578 kb on + strandat 5734.579 kb on - strandat 5734.620 kb on + strandat 5734.621 kb on - strandat 5734.726 kb on - strand, within AO353_26035at 5734.742 kb on - strand, within AO353_26035at 5734.784 kb on - strand, within AO353_26035at 5734.784 kb on - strand, within AO353_26035at 5734.815 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.845 kb on + strand, within AO353_26035at 5734.846 kb on - strand, within AO353_26035at 5734.846 kb on - strand, within AO353_26035at 5734.846 kb on - strand, within AO353_26035at 5734.850 kb on + strand, within AO353_26035at 5734.850 kb on + strand, within AO353_26035at 5734.882 kb on + strand, within AO353_26035at 5734.882 kb on + strand, within AO353_26035at 5734.882 kb on + strand, within AO353_26035at 5734.883 kb on - strand, within AO353_26035at 5734.883 kb on - strand, within AO353_26035at 5734.916 kb on + strand, within AO353_26035at 5734.916 kb on + strand, within AO353_26035at 5734.916 kb on + strand, within AO353_26035at 5734.916 kb on + strand, within AO353_26035at 5734.995 kb on + strand, within AO353_26035at 5734.995 kb on + strand, within AO353_26035at 5734.995 kb on + strand, within AO353_26035at 5734.996 kb on - strand, within AO353_26035at 5734.996 kb on - strand, within AO353_26035at 5734.996 kb on - strand, within AO353_26035at 5734.996 kb on - strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.037 kb on + strand, within AO353_26035at 5735.038 kb on - strand, within AO353_26035at 5735.258 kb on + strandat 5735.292 kb on + strandat 5735.292 kb on + strandat 5735.292 kb on + strandat 5735.293 kb on - strandat 5735.293 kb on - strandat 5735.293 kb on - strandat 5735.293 kb on - strandat 5735.293 kb on - strandat 5735.293 kb on - strandat 5735.367 kb on + strandat 5735.367 kb on + strandat 5735.368 kb on - strandat 5735.368 kb on - strandat 5735.429 kb on + strandat 5735.429 kb on + strandat 5735.430 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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5,732,893 + AO353_26015 0.60 -0.5
5,733,027 - -0.9
5,733,041 + -0.5
5,733,048 - -0.4
5,733,224 + AO353_26020 0.36 +0.3
5,733,350 - AO353_26020 0.85 -1.1
5,733,401 - +2.0
5,733,421 - +1.6
5,733,435 + +1.3
5,733,435 + -1.8
5,733,435 + -2.1
5,733,435 + -0.5
5,733,436 - -1.8
5,733,436 - +1.0
5,733,436 - +1.0
5,733,511 + AO353_26025 0.15 +0.0
5,733,511 + AO353_26025 0.15 +0.6
5,733,511 + AO353_26025 0.15 +0.8
5,733,511 + AO353_26025 0.15 -2.4
5,733,511 + AO353_26025 0.15 -1.5
5,733,511 + AO353_26025 0.15 -0.8
5,733,511 + AO353_26025 0.15 -0.5
5,733,512 - AO353_26025 0.15 +0.6
5,733,512 - AO353_26025 0.15 -0.5
5,733,512 - AO353_26025 0.15 +0.3
5,733,512 - AO353_26025 0.15 +2.0
5,733,512 - AO353_26025 0.15 +0.2
5,733,512 - AO353_26025 0.15 +1.5
5,733,512 - AO353_26025 0.15 -0.5
5,733,512 - AO353_26025 0.15 +0.0
5,733,512 - AO353_26025 0.15 -0.4
5,733,512 - AO353_26025 0.15 -2.3
5,733,512 - AO353_26025 0.15 -0.5
5,733,512 - AO353_26025 0.15 +0.8
5,733,641 - AO353_26025 0.75 +0.3
5,733,667 + AO353_26025 0.87 +1.6
5,733,667 + AO353_26025 0.87 -0.3
5,733,667 + AO353_26025 0.87 -0.3
5,733,668 - AO353_26025 0.88 -0.5
5,733,728 - -0.3
5,733,728 - +2.0
5,733,728 - -1.5
5,733,728 - +0.8
5,733,728 - +0.8
5,733,729 + -1.5
5,733,730 - -0.5
5,733,841 + -0.3
5,733,841 + -1.1
5,733,841 + -0.4
5,733,841 + -0.4
5,733,841 + -0.1
5,733,842 - +0.3
5,733,842 - -1.3
5,733,842 - +0.8
5,733,842 - +1.3
5,733,842 - +1.0
5,733,842 - -0.2
5,733,842 - +0.5
5,733,842 - -0.3
5,733,851 + +0.5
5,733,851 + +0.5
5,733,851 + -0.5
5,733,852 - +0.6
5,733,852 - +0.6
5,733,852 - +0.8
5,733,854 + +0.0
5,733,855 - -1.0
5,733,855 - +0.9
5,733,855 - +0.7
5,733,883 + +1.6
5,733,883 + +1.0
5,733,883 + -1.5
5,733,884 - -1.3
5,733,884 - -1.3
5,733,886 + -0.3
5,733,886 + -0.2
5,733,886 + -0.3
5,733,886 + -0.4
5,733,887 - -2.5
5,733,887 - +3.9
5,733,890 + +1.6
5,733,890 + +0.2
5,733,890 + -0.5
5,733,891 - -0.4
5,733,891 - -1.4
5,733,891 - -1.3
5,733,990 + AO353_26030 0.23 +0.4
5,733,991 - +1.0
5,734,035 + AO353_26030 0.30 -0.4
5,734,036 - AO353_26030 0.30 +1.2
5,734,050 + AO353_26030 0.33 +0.2
5,734,050 + AO353_26030 0.33 -0.4
5,734,051 - AO353_26030 0.33 +0.7
5,734,051 - AO353_26030 0.33 -0.5
5,734,051 - AO353_26030 0.33 -2.5
5,734,051 - AO353_26030 0.33 +0.3
5,734,051 - AO353_26030 0.33 +0.7
5,734,051 - AO353_26030 0.33 +0.6
5,734,094 + AO353_26030 0.40 -0.8
5,734,094 + AO353_26030 0.40 -0.7
5,734,094 + AO353_26030 0.40 +1.0
5,734,095 - AO353_26030 0.40 +0.2
5,734,095 - AO353_26030 0.40 +1.0
5,734,095 - AO353_26030 0.40 +2.0
5,734,095 - AO353_26030 0.40 +0.6
5,734,184 + AO353_26030 0.54 +0.1
5,734,195 + AO353_26030 0.56 -1.2
5,734,195 + AO353_26030 0.56 +0.2
5,734,195 + AO353_26030 0.56 +1.4
5,734,195 + AO353_26030 0.56 -2.3
5,734,196 - AO353_26030 0.56 +0.1
5,734,298 + AO353_26030 0.72 -1.4
5,734,298 + AO353_26030 0.72 -2.8
5,734,298 + AO353_26030 0.72 +0.0
5,734,298 + AO353_26030 0.72 -1.7
5,734,298 + AO353_26030 0.72 +1.3
5,734,299 - AO353_26030 0.73 +0.8
5,734,299 - AO353_26030 0.73 +0.5
5,734,299 - AO353_26030 0.73 +0.6
5,734,299 - AO353_26030 0.73 +0.3
5,734,299 - AO353_26030 0.73 -0.2
5,734,299 - AO353_26030 0.73 -2.5
5,734,388 + AO353_26030 0.87 +0.2
5,734,456 + -0.9
5,734,485 - -0.4
5,734,512 - -0.3
5,734,512 - -0.8
5,734,515 + -0.7
5,734,554 + +1.8
5,734,578 + +0.2
5,734,578 + -0.5
5,734,578 + -0.9
5,734,579 - -1.0
5,734,620 + -0.4
5,734,621 - +0.2
5,734,726 - AO353_26035 0.25 -0.6
5,734,742 - AO353_26035 0.28 +1.3
5,734,784 - AO353_26035 0.34 -2.0
5,734,784 - AO353_26035 0.34 +1.6
5,734,815 + AO353_26035 0.39 +0.1
5,734,845 + AO353_26035 0.44 +0.4
5,734,845 + AO353_26035 0.44 +1.9
5,734,845 + AO353_26035 0.44 +0.4
5,734,845 + AO353_26035 0.44 -1.1
5,734,845 + AO353_26035 0.44 +0.2
5,734,845 + AO353_26035 0.44 +1.5
5,734,846 - AO353_26035 0.44 +0.2
5,734,846 - AO353_26035 0.44 +0.0
5,734,846 - AO353_26035 0.44 +2.0
5,734,850 + AO353_26035 0.45 +0.6
5,734,850 + AO353_26035 0.45 +1.3
5,734,882 + AO353_26035 0.50 -0.7
5,734,882 + AO353_26035 0.50 +0.3
5,734,882 + AO353_26035 0.50 -1.4
5,734,883 - AO353_26035 0.50 +0.0
5,734,883 - AO353_26035 0.50 +0.0
5,734,916 + AO353_26035 0.55 +1.0
5,734,916 + AO353_26035 0.55 +0.7
5,734,916 + AO353_26035 0.55 +1.0
5,734,916 + AO353_26035 0.55 +1.2
5,734,995 + AO353_26035 0.67 -0.2
5,734,995 + AO353_26035 0.67 -0.9
5,734,995 + AO353_26035 0.67 +0.5
5,734,996 - AO353_26035 0.67 +1.6
5,734,996 - AO353_26035 0.67 -1.4
5,734,996 - AO353_26035 0.67 -0.2
5,734,996 - AO353_26035 0.67 -0.4
5,735,037 + AO353_26035 0.73 -0.5
5,735,037 + AO353_26035 0.73 -0.8
5,735,037 + AO353_26035 0.73 -0.2
5,735,037 + AO353_26035 0.73 +0.3
5,735,037 + AO353_26035 0.73 +0.7
5,735,037 + AO353_26035 0.73 +0.5
5,735,038 - AO353_26035 0.74 +0.2
5,735,258 + -0.4
5,735,292 + +0.0
5,735,292 + -2.8
5,735,292 + -0.8
5,735,293 - +0.0
5,735,293 - -1.4
5,735,293 - -0.3
5,735,293 - +0.5
5,735,293 - -0.5
5,735,293 - -1.1
5,735,367 + -1.8
5,735,367 + -1.8
5,735,368 - -0.4
5,735,368 - +0.2
5,735,429 + -0.5
5,735,429 + -1.9
5,735,430 - -0.5

Or see this region's nucleotide sequence