Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_17915

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_17905 and AO353_17910 are separated by 225 nucleotidesAO353_17910 and AO353_17915 are separated by 77 nucleotidesAO353_17915 and AO353_17920 are separated by 73 nucleotides AO353_17905: AO353_17905 - RND transporter, at 3,941,637 to 3,944,870 _17905 AO353_17910: AO353_17910 - hypothetical protein, at 3,945,096 to 3,945,500 _17910 AO353_17915: AO353_17915 - hypothetical protein, at 3,945,578 to 3,945,988 _17915 AO353_17920: AO353_17920 - histidine kinase, at 3,946,062 to 3,947,441 _17920 Position (kb) 3945 3946Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3944.627 kb on + strandat 3944.628 kb on - strandat 3944.628 kb on - strandat 3944.668 kb on + strandat 3944.668 kb on + strandat 3944.668 kb on + strandat 3944.668 kb on + strandat 3944.668 kb on + strandat 3944.668 kb on + strandat 3944.668 kb on + strandat 3944.668 kb on + strandat 3944.668 kb on + strandat 3944.669 kb on - strandat 3944.669 kb on - strandat 3944.669 kb on - strandat 3944.669 kb on - strandat 3944.669 kb on - strandat 3944.669 kb on - strandat 3944.669 kb on - strandat 3944.669 kb on - strandat 3944.669 kb on - strandat 3944.669 kb on - strandat 3944.672 kb on + strandat 3944.672 kb on + strandat 3944.672 kb on + strandat 3944.672 kb on + strandat 3944.672 kb on + strandat 3944.672 kb on + strandat 3944.672 kb on + strandat 3944.672 kb on + strandat 3944.672 kb on + strandat 3944.672 kb on + strandat 3944.673 kb on - strandat 3944.673 kb on - strandat 3944.673 kb on - strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.674 kb on + strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.675 kb on - strandat 3944.693 kb on + strandat 3944.716 kb on + strandat 3944.716 kb on + strandat 3944.716 kb on + strandat 3944.716 kb on + strandat 3944.717 kb on - strandat 3944.717 kb on - strandat 3944.826 kb on - strandat 3944.834 kb on - strandat 3944.927 kb on + strandat 3944.927 kb on + strandat 3944.928 kb on - strandat 3945.116 kb on - strandat 3945.116 kb on - strandat 3945.273 kb on + strand, within AO353_17910at 3945.373 kb on - strand, within AO353_17910at 3945.373 kb on - strand, within AO353_17910at 3945.400 kb on - strand, within AO353_17910at 3945.406 kb on + strand, within AO353_17910at 3945.406 kb on + strand, within AO353_17910at 3945.406 kb on + strand, within AO353_17910at 3945.407 kb on - strand, within AO353_17910at 3945.407 kb on - strand, within AO353_17910at 3945.407 kb on - strand, within AO353_17910at 3945.407 kb on - strand, within AO353_17910at 3945.407 kb on - strand, within AO353_17910at 3945.410 kb on + strand, within AO353_17910at 3945.410 kb on + strand, within AO353_17910at 3945.410 kb on + strand, within AO353_17910at 3945.410 kb on + strand, within AO353_17910at 3945.410 kb on + strand, within AO353_17910at 3945.410 kb on + strand, within AO353_17910at 3945.410 kb on + strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.411 kb on - strand, within AO353_17910at 3945.498 kb on + strandat 3945.498 kb on + strandat 3945.498 kb on + strandat 3945.498 kb on + strandat 3945.499 kb on - strandat 3945.557 kb on + strandat 3945.557 kb on + strandat 3945.558 kb on - strandat 3945.558 kb on - strandat 3945.586 kb on + strandat 3945.586 kb on + strandat 3945.586 kb on + strandat 3945.586 kb on + strandat 3945.586 kb on + strandat 3945.586 kb on + strandat 3945.586 kb on + strandat 3945.587 kb on - strandat 3945.587 kb on - strandat 3945.587 kb on - strandat 3945.587 kb on - strandat 3945.587 kb on - strandat 3945.587 kb on - strandat 3945.587 kb on - strandat 3945.587 kb on - strandat 3945.587 kb on - strandat 3945.739 kb on + strand, within AO353_17915at 3945.740 kb on - strand, within AO353_17915at 3945.854 kb on + strand, within AO353_17915at 3945.854 kb on + strand, within AO353_17915at 3945.881 kb on + strand, within AO353_17915at 3945.881 kb on + strand, within AO353_17915at 3945.881 kb on + strand, within AO353_17915at 3945.881 kb on + strand, within AO353_17915at 3945.881 kb on + strand, within AO353_17915at 3945.881 kb on + strand, within AO353_17915at 3945.881 kb on + strand, within AO353_17915at 3945.881 kb on + strand, within AO353_17915at 3945.881 kb on + strand, within AO353_17915at 3945.882 kb on - strand, within AO353_17915at 3945.882 kb on - strand, within AO353_17915at 3945.882 kb on - strand, within AO353_17915at 3945.882 kb on - strand, within AO353_17915at 3945.882 kb on - strand, within AO353_17915at 3945.882 kb on - strand, within AO353_17915at 3945.970 kb on + strandat 3945.970 kb on + strandat 3945.970 kb on + strandat 3945.971 kb on - strandat 3945.971 kb on - strandat 3945.971 kb on - strandat 3945.971 kb on - strandat 3945.971 kb on - strandat 3946.015 kb on - strandat 3946.040 kb on + strandat 3946.040 kb on + strandat 3946.041 kb on - strandat 3946.041 kb on - strandat 3946.041 kb on - strandat 3946.041 kb on - strandat 3946.041 kb on - strandat 3946.064 kb on - strandat 3946.210 kb on + strand, within AO353_17920at 3946.211 kb on - strand, within AO353_17920at 3946.224 kb on + strand, within AO353_17920at 3946.224 kb on + strand, within AO353_17920at 3946.225 kb on - strand, within AO353_17920at 3946.225 kb on - strand, within AO353_17920at 3946.419 kb on + strand, within AO353_17920at 3946.465 kb on + strand, within AO353_17920at 3946.465 kb on + strand, within AO353_17920at 3946.465 kb on + strand, within AO353_17920at 3946.465 kb on + strand, within AO353_17920at 3946.465 kb on + strand, within AO353_17920at 3946.465 kb on + strand, within AO353_17920at 3946.466 kb on - strand, within AO353_17920at 3946.466 kb on - strand, within AO353_17920at 3946.466 kb on - strand, within AO353_17920at 3946.466 kb on - strand, within AO353_17920at 3946.466 kb on - strand, within AO353_17920at 3946.466 kb on - strand, within AO353_17920at 3946.466 kb on - strand, within AO353_17920at 3946.584 kb on - strand, within AO353_17920at 3946.653 kb on - strand, within AO353_17920at 3946.657 kb on + strand, within AO353_17920at 3946.657 kb on + strand, within AO353_17920at 3946.657 kb on + strand, within AO353_17920at 3946.658 kb on - strand, within AO353_17920at 3946.658 kb on - strand, within AO353_17920at 3946.658 kb on - strand, within AO353_17920at 3946.658 kb on - strand, within AO353_17920at 3946.658 kb on - strand, within AO353_17920at 3946.671 kb on + strand, within AO353_17920at 3946.671 kb on + strand, within AO353_17920at 3946.671 kb on + strand, within AO353_17920at 3946.671 kb on + strand, within AO353_17920at 3946.671 kb on + strand, within AO353_17920at 3946.671 kb on + strand, within AO353_17920at 3946.672 kb on - strand, within AO353_17920at 3946.672 kb on - strand, within AO353_17920at 3946.672 kb on - strand, within AO353_17920at 3946.672 kb on - strand, within AO353_17920at 3946.672 kb on - strand, within AO353_17920at 3946.672 kb on - strand, within AO353_17920at 3946.672 kb on - strand, within AO353_17920at 3946.672 kb on - strand, within AO353_17920at 3946.672 kb on - strand, within AO353_17920at 3946.673 kb on + strand, within AO353_17920at 3946.673 kb on + strand, within AO353_17920at 3946.674 kb on - strand, within AO353_17920at 3946.674 kb on - strand, within AO353_17920at 3946.718 kb on + strand, within AO353_17920at 3946.719 kb on - strand, within AO353_17920at 3946.784 kb on + strand, within AO353_17920at 3946.784 kb on + strand, within AO353_17920at 3946.784 kb on + strand, within AO353_17920at 3946.785 kb on - strand, within AO353_17920at 3946.940 kb on + strand, within AO353_17920at 3946.941 kb on - strand, within AO353_17920

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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3,944,627 + +1.2
3,944,628 - -0.9
3,944,628 - +0.4
3,944,668 + -0.9
3,944,668 + +0.3
3,944,668 + -0.3
3,944,668 + -0.5
3,944,668 + -0.7
3,944,668 + +0.5
3,944,668 + +0.1
3,944,668 + +1.5
3,944,668 + -0.9
3,944,669 - -0.8
3,944,669 - -0.4
3,944,669 - +0.2
3,944,669 - +0.7
3,944,669 - +0.3
3,944,669 - -1.2
3,944,669 - +0.8
3,944,669 - -0.8
3,944,669 - +0.9
3,944,669 - -1.1
3,944,672 + +1.8
3,944,672 + +0.3
3,944,672 + -0.2
3,944,672 + -0.5
3,944,672 + +0.6
3,944,672 + +0.1
3,944,672 + +0.0
3,944,672 + +0.5
3,944,672 + -1.5
3,944,672 + +0.5
3,944,673 - +0.3
3,944,673 - -1.0
3,944,673 - -0.5
3,944,674 + +1.0
3,944,674 + -0.3
3,944,674 + +0.4
3,944,674 + +0.5
3,944,674 + +0.9
3,944,674 + -1.2
3,944,674 + -0.6
3,944,674 + -0.0
3,944,674 + +0.9
3,944,674 + +0.4
3,944,674 + -0.1
3,944,674 + -0.0
3,944,674 + -0.3
3,944,674 + -0.6
3,944,674 + -0.3
3,944,674 + -1.2
3,944,674 + -0.3
3,944,674 + -0.5
3,944,674 + -0.5
3,944,674 + +0.5
3,944,674 + +2.8
3,944,674 + +0.7
3,944,674 + -0.9
3,944,674 + -1.9
3,944,674 + +0.9
3,944,674 + +1.5
3,944,674 + +0.3
3,944,674 + +0.5
3,944,674 + -0.5
3,944,674 + -1.6
3,944,674 + +0.1
3,944,674 + -0.5
3,944,674 + -0.2
3,944,674 + -0.7
3,944,674 + -0.8
3,944,675 - -0.0
3,944,675 - -0.7
3,944,675 - -0.1
3,944,675 - -0.5
3,944,675 - +0.2
3,944,675 - -0.2
3,944,675 - -0.5
3,944,675 - +1.7
3,944,675 - +1.0
3,944,675 - +0.1
3,944,675 - +2.1
3,944,675 - -1.8
3,944,675 - +0.3
3,944,675 - -0.8
3,944,675 - -1.0
3,944,675 - +1.0
3,944,675 - -0.5
3,944,675 - -0.8
3,944,675 - -0.2
3,944,675 - -0.3
3,944,675 - +0.9
3,944,675 - -1.4
3,944,693 + +0.1
3,944,716 + +0.5
3,944,716 + +0.2
3,944,716 + +0.7
3,944,716 + -0.9
3,944,717 - +0.3
3,944,717 - +1.0
3,944,826 - -1.6
3,944,834 - +0.5
3,944,927 + +0.5
3,944,927 + -0.7
3,944,928 - -0.9
3,945,116 - +0.7
3,945,116 - +1.0
3,945,273 + AO353_17910 0.44 +0.1
3,945,373 - AO353_17910 0.68 -0.0
3,945,373 - AO353_17910 0.68 -1.5
3,945,400 - AO353_17910 0.75 -0.1
3,945,406 + AO353_17910 0.77 +0.4
3,945,406 + AO353_17910 0.77 -0.8
3,945,406 + AO353_17910 0.77 +0.5
3,945,407 - AO353_17910 0.77 -0.7
3,945,407 - AO353_17910 0.77 -0.1
3,945,407 - AO353_17910 0.77 +1.0
3,945,407 - AO353_17910 0.77 -0.0
3,945,407 - AO353_17910 0.77 +1.1
3,945,410 + AO353_17910 0.78 +0.4
3,945,410 + AO353_17910 0.78 +1.2
3,945,410 + AO353_17910 0.78 +0.1
3,945,410 + AO353_17910 0.78 +0.2
3,945,410 + AO353_17910 0.78 +0.5
3,945,410 + AO353_17910 0.78 -1.8
3,945,410 + AO353_17910 0.78 +0.7
3,945,411 - AO353_17910 0.78 +0.1
3,945,411 - AO353_17910 0.78 -0.3
3,945,411 - AO353_17910 0.78 +1.2
3,945,411 - AO353_17910 0.78 -1.3
3,945,411 - AO353_17910 0.78 +0.2
3,945,411 - AO353_17910 0.78 -0.5
3,945,411 - AO353_17910 0.78 +1.3
3,945,411 - AO353_17910 0.78 -0.2
3,945,411 - AO353_17910 0.78 -0.1
3,945,411 - AO353_17910 0.78 -2.4
3,945,411 - AO353_17910 0.78 +0.4
3,945,411 - AO353_17910 0.78 +0.3
3,945,498 + -0.8
3,945,498 + -0.5
3,945,498 + +0.2
3,945,498 + -0.1
3,945,499 - +1.5
3,945,557 + -0.7
3,945,557 + +0.1
3,945,558 - +0.2
3,945,558 - -1.5
3,945,586 + +0.3
3,945,586 + -1.8
3,945,586 + -1.4
3,945,586 + +0.4
3,945,586 + +0.2
3,945,586 + +1.2
3,945,586 + -2.0
3,945,587 - +0.2
3,945,587 - -0.3
3,945,587 - +0.8
3,945,587 - -0.5
3,945,587 - -0.8
3,945,587 - +0.1
3,945,587 - -1.0
3,945,587 - +0.7
3,945,587 - -0.7
3,945,739 + AO353_17915 0.39 +0.8
3,945,740 - AO353_17915 0.39 +0.3
3,945,854 + AO353_17915 0.67 +0.3
3,945,854 + AO353_17915 0.67 +0.2
3,945,881 + AO353_17915 0.74 -0.8
3,945,881 + AO353_17915 0.74 +1.0
3,945,881 + AO353_17915 0.74 -0.3
3,945,881 + AO353_17915 0.74 -1.6
3,945,881 + AO353_17915 0.74 -0.3
3,945,881 + AO353_17915 0.74 +1.1
3,945,881 + AO353_17915 0.74 -0.2
3,945,881 + AO353_17915 0.74 +0.2
3,945,881 + AO353_17915 0.74 +1.0
3,945,882 - AO353_17915 0.74 +0.4
3,945,882 - AO353_17915 0.74 +1.5
3,945,882 - AO353_17915 0.74 +0.7
3,945,882 - AO353_17915 0.74 +0.2
3,945,882 - AO353_17915 0.74 +0.8
3,945,882 - AO353_17915 0.74 -0.5
3,945,970 + -1.6
3,945,970 + -1.3
3,945,970 + -0.1
3,945,971 - -0.5
3,945,971 - +0.4
3,945,971 - -1.2
3,945,971 - +0.0
3,945,971 - -2.0
3,946,015 - -0.0
3,946,040 + +0.3
3,946,040 + +0.9
3,946,041 - +0.8
3,946,041 - +1.1
3,946,041 - -0.7
3,946,041 - +0.5
3,946,041 - -0.2
3,946,064 - +0.3
3,946,210 + AO353_17920 0.11 -0.4
3,946,211 - AO353_17920 0.11 +0.2
3,946,224 + AO353_17920 0.12 -0.0
3,946,224 + AO353_17920 0.12 +2.5
3,946,225 - AO353_17920 0.12 +0.4
3,946,225 - AO353_17920 0.12 -0.6
3,946,419 + AO353_17920 0.26 +0.5
3,946,465 + AO353_17920 0.29 +0.6
3,946,465 + AO353_17920 0.29 -0.2
3,946,465 + AO353_17920 0.29 +1.5
3,946,465 + AO353_17920 0.29 +0.3
3,946,465 + AO353_17920 0.29 +1.0
3,946,465 + AO353_17920 0.29 -0.9
3,946,466 - AO353_17920 0.29 -0.5
3,946,466 - AO353_17920 0.29 -0.1
3,946,466 - AO353_17920 0.29 -0.3
3,946,466 - AO353_17920 0.29 +0.9
3,946,466 - AO353_17920 0.29 -1.6
3,946,466 - AO353_17920 0.29 +0.7
3,946,466 - AO353_17920 0.29 -0.9
3,946,584 - AO353_17920 0.38 +0.2
3,946,653 - AO353_17920 0.43 -0.0
3,946,657 + AO353_17920 0.43 +2.4
3,946,657 + AO353_17920 0.43 -1.3
3,946,657 + AO353_17920 0.43 +0.0
3,946,658 - AO353_17920 0.43 -0.5
3,946,658 - AO353_17920 0.43 +0.8
3,946,658 - AO353_17920 0.43 -0.1
3,946,658 - AO353_17920 0.43 +1.1
3,946,658 - AO353_17920 0.43 +1.1
3,946,671 + AO353_17920 0.44 -1.6
3,946,671 + AO353_17920 0.44 -1.8
3,946,671 + AO353_17920 0.44 +0.3
3,946,671 + AO353_17920 0.44 +1.1
3,946,671 + AO353_17920 0.44 -1.4
3,946,671 + AO353_17920 0.44 -0.0
3,946,672 - AO353_17920 0.44 +0.3
3,946,672 - AO353_17920 0.44 +0.8
3,946,672 - AO353_17920 0.44 +0.5
3,946,672 - AO353_17920 0.44 +1.1
3,946,672 - AO353_17920 0.44 +0.1
3,946,672 - AO353_17920 0.44 +0.3
3,946,672 - AO353_17920 0.44 +0.7
3,946,672 - AO353_17920 0.44 -1.8
3,946,672 - AO353_17920 0.44 +2.8
3,946,673 + AO353_17920 0.44 +0.8
3,946,673 + AO353_17920 0.44 -0.2
3,946,674 - AO353_17920 0.44 -0.2
3,946,674 - AO353_17920 0.44 -0.2
3,946,718 + AO353_17920 0.48 +0.0
3,946,719 - AO353_17920 0.48 -0.6
3,946,784 + AO353_17920 0.52 +1.0
3,946,784 + AO353_17920 0.52 +0.7
3,946,784 + AO353_17920 0.52 +0.3
3,946,785 - AO353_17920 0.52 +0.1
3,946,940 + AO353_17920 0.64 -0.0
3,946,941 - AO353_17920 0.64 +2.9

Or see this region's nucleotide sequence