Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_13110

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_13100 and AO353_13105 are separated by 107 nucleotidesAO353_13105 and AO353_13110 are separated by 227 nucleotidesAO353_13110 and AO353_13115 are separated by 11 nucleotides AO353_13100: AO353_13100 - GTPase RsgA, at 2,903,562 to 2,904,593 _13100 AO353_13105: AO353_13105 - oligoribonuclease, at 2,904,701 to 2,905,243 _13105 AO353_13110: AO353_13110 - putative transporter, required for glycine utilization (from data), at 2,905,471 to 2,906,082 _13110 AO353_13115: AO353_13115 - epoxyqueuosine reductase, at 2,906,094 to 2,907,158 _13115 Position (kb) 2905 2906 2907Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2904.611 kb on - strandat 2904.623 kb on - strandat 2904.623 kb on - strandat 2904.623 kb on - strandat 2904.627 kb on - strandat 2904.643 kb on + strandat 2904.643 kb on + strandat 2904.643 kb on + strandat 2904.643 kb on + strandat 2904.664 kb on + strandat 2904.664 kb on + strandat 2904.664 kb on + strandat 2904.664 kb on + strandat 2904.665 kb on - strandat 2904.665 kb on - strandat 2904.669 kb on + strandat 2905.253 kb on - strandat 2905.309 kb on + strandat 2905.309 kb on + strandat 2905.309 kb on + strandat 2905.309 kb on + strandat 2905.323 kb on - strandat 2905.329 kb on + strandat 2905.329 kb on + strandat 2905.329 kb on + strandat 2905.330 kb on - strandat 2905.341 kb on + strandat 2905.341 kb on + strandat 2905.341 kb on + strandat 2905.341 kb on + strandat 2905.341 kb on + strandat 2905.342 kb on - strandat 2905.342 kb on - strandat 2905.342 kb on - strandat 2905.342 kb on - strandat 2905.342 kb on - strandat 2905.395 kb on + strandat 2905.395 kb on + strandat 2905.395 kb on + strandat 2905.395 kb on + strandat 2905.395 kb on + strandat 2905.395 kb on + strandat 2905.395 kb on + strandat 2905.395 kb on + strandat 2905.395 kb on + strandat 2905.395 kb on + strandat 2905.396 kb on - strandat 2905.396 kb on - strandat 2905.397 kb on + strandat 2905.397 kb on + strandat 2905.397 kb on + strandat 2905.397 kb on + strandat 2905.398 kb on - strandat 2905.398 kb on - strandat 2905.398 kb on - strandat 2905.439 kb on - strandat 2905.457 kb on + strandat 2905.458 kb on - strandat 2905.486 kb on + strandat 2905.486 kb on + strandat 2905.486 kb on + strandat 2905.486 kb on + strandat 2905.486 kb on + strandat 2905.487 kb on - strandat 2905.487 kb on - strandat 2905.487 kb on - strandat 2905.657 kb on + strand, within AO353_13110at 2905.657 kb on + strand, within AO353_13110at 2905.657 kb on + strand, within AO353_13110at 2905.658 kb on - strand, within AO353_13110at 2905.658 kb on - strand, within AO353_13110at 2905.739 kb on + strand, within AO353_13110at 2905.752 kb on - strand, within AO353_13110at 2905.768 kb on - strand, within AO353_13110at 2905.913 kb on - strand, within AO353_13110at 2905.913 kb on - strand, within AO353_13110at 2905.945 kb on + strand, within AO353_13110at 2905.945 kb on + strand, within AO353_13110at 2905.945 kb on + strand, within AO353_13110at 2905.945 kb on + strand, within AO353_13110at 2905.945 kb on + strand, within AO353_13110at 2905.945 kb on + strand, within AO353_13110at 2905.945 kb on + strand, within AO353_13110at 2905.945 kb on + strand, within AO353_13110at 2905.945 kb on + strand, within AO353_13110at 2905.945 kb on + strand, within AO353_13110at 2905.946 kb on - strand, within AO353_13110at 2905.946 kb on - strand, within AO353_13110at 2905.946 kb on - strand, within AO353_13110at 2905.946 kb on - strand, within AO353_13110at 2905.946 kb on - strand, within AO353_13110at 2905.946 kb on - strand, within AO353_13110at 2905.946 kb on - strand, within AO353_13110at 2905.960 kb on + strand, within AO353_13110at 2905.960 kb on + strand, within AO353_13110at 2905.961 kb on - strand, within AO353_13110at 2905.961 kb on - strand, within AO353_13110at 2905.970 kb on + strand, within AO353_13110at 2905.970 kb on + strand, within AO353_13110at 2906.065 kb on + strandat 2906.066 kb on - strandat 2906.066 kb on - strandat 2906.066 kb on - strandat 2906.096 kb on - strandat 2906.246 kb on - strand, within AO353_13115at 2906.489 kb on - strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.514 kb on + strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strandat 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.515 kb on - strand, within AO353_13115at 2906.518 kb on + strand, within AO353_13115at 2906.518 kb on + strand, within AO353_13115at 2906.518 kb on + strand, within AO353_13115at 2906.518 kb on + strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.519 kb on - strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.644 kb on + strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.645 kb on - strand, within AO353_13115at 2906.667 kb on + strand, within AO353_13115at 2906.667 kb on + strand, within AO353_13115at 2906.845 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.857 kb on + strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.858 kb on - strand, within AO353_13115at 2906.911 kb on + strand, within AO353_13115at 2906.911 kb on + strand, within AO353_13115at 2906.911 kb on + strand, within AO353_13115at 2906.995 kb on + strand, within AO353_13115at 2906.995 kb on + strand, within AO353_13115at 2906.995 kb on + strand, within AO353_13115at 2906.995 kb on + strand, within AO353_13115at 2906.995 kb on + strand, within AO353_13115at 2906.996 kb on - strand, within AO353_13115at 2906.996 kb on - strand, within AO353_13115at 2906.996 kb on - strand, within AO353_13115

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,904,611 - -0.3
2,904,623 - +0.8
2,904,623 - +0.7
2,904,623 - +0.1
2,904,627 - -0.3
2,904,643 + -2.2
2,904,643 + +0.6
2,904,643 + +1.2
2,904,643 + +0.9
2,904,664 + -1.3
2,904,664 + -0.4
2,904,664 + -2.2
2,904,664 + +1.1
2,904,665 - -1.0
2,904,665 - +1.5
2,904,669 + -0.1
2,905,253 - +1.5
2,905,309 + +0.7
2,905,309 + +1.6
2,905,309 + +0.3
2,905,309 + +1.2
2,905,323 - -0.3
2,905,329 + -0.3
2,905,329 + +0.2
2,905,329 + -0.8
2,905,330 - -0.2
2,905,341 + -1.6
2,905,341 + -2.1
2,905,341 + -0.3
2,905,341 + +0.2
2,905,341 + +0.1
2,905,342 - -2.2
2,905,342 - -1.0
2,905,342 - +0.5
2,905,342 - -1.1
2,905,342 - -0.1
2,905,395 + +0.4
2,905,395 + +1.6
2,905,395 + +1.1
2,905,395 + -0.4
2,905,395 + +0.1
2,905,395 + -1.2
2,905,395 + +1.3
2,905,395 + -0.6
2,905,395 + -2.0
2,905,395 + -0.6
2,905,396 - +0.4
2,905,396 - +0.6
2,905,397 + -0.1
2,905,397 + +1.4
2,905,397 + +0.3
2,905,397 + +0.7
2,905,398 - -2.8
2,905,398 - +0.3
2,905,398 - -0.0
2,905,439 - +0.7
2,905,457 + -0.2
2,905,458 - +0.9
2,905,486 + +0.3
2,905,486 + +1.0
2,905,486 + +0.9
2,905,486 + +0.6
2,905,486 + -0.7
2,905,487 - +0.2
2,905,487 - +1.5
2,905,487 - +0.3
2,905,657 + AO353_13110 0.30 +0.9
2,905,657 + AO353_13110 0.30 +1.2
2,905,657 + AO353_13110 0.30 +0.3
2,905,658 - AO353_13110 0.31 +0.9
2,905,658 - AO353_13110 0.31 +0.8
2,905,739 + AO353_13110 0.44 -0.2
2,905,752 - AO353_13110 0.46 -1.2
2,905,768 - AO353_13110 0.49 -0.2
2,905,913 - AO353_13110 0.72 +0.6
2,905,913 - AO353_13110 0.72 +1.4
2,905,945 + AO353_13110 0.77 +0.5
2,905,945 + AO353_13110 0.77 +0.9
2,905,945 + AO353_13110 0.77 -0.4
2,905,945 + AO353_13110 0.77 -0.8
2,905,945 + AO353_13110 0.77 +0.0
2,905,945 + AO353_13110 0.77 +1.3
2,905,945 + AO353_13110 0.77 +0.2
2,905,945 + AO353_13110 0.77 -1.4
2,905,945 + AO353_13110 0.77 +1.1
2,905,945 + AO353_13110 0.77 +0.6
2,905,946 - AO353_13110 0.78 +0.6
2,905,946 - AO353_13110 0.78 +1.3
2,905,946 - AO353_13110 0.78 +0.6
2,905,946 - AO353_13110 0.78 +0.9
2,905,946 - AO353_13110 0.78 -0.1
2,905,946 - AO353_13110 0.78 -0.7
2,905,946 - AO353_13110 0.78 -1.3
2,905,960 + AO353_13110 0.80 +0.3
2,905,960 + AO353_13110 0.80 -0.4
2,905,961 - AO353_13110 0.80 -0.4
2,905,961 - AO353_13110 0.80 +0.0
2,905,970 + AO353_13110 0.82 +0.6
2,905,970 + AO353_13110 0.82 +0.6
2,906,065 + +0.7
2,906,066 - +1.7
2,906,066 - +1.9
2,906,066 - +0.9
2,906,096 - -0.4
2,906,246 - AO353_13115 0.14 -0.4
2,906,489 - AO353_13115 0.37 +0.1
2,906,514 + AO353_13115 0.39 -0.3
2,906,514 + AO353_13115 0.39 -0.2
2,906,514 + AO353_13115 0.39 +0.3
2,906,514 + AO353_13115 0.39 -1.3
2,906,514 + AO353_13115 0.39 -0.8
2,906,514 + AO353_13115 0.39 -1.1
2,906,514 + AO353_13115 0.39 +0.3
2,906,514 + AO353_13115 0.39 -0.4
2,906,514 + AO353_13115 0.39 -0.9
2,906,514 + AO353_13115 0.39 +1.0
2,906,514 + AO353_13115 0.39 -0.5
2,906,514 + AO353_13115 0.39 +0.5
2,906,514 + AO353_13115 0.39 +0.9
2,906,514 + AO353_13115 0.39 +0.8
2,906,514 + AO353_13115 0.39 +0.5
2,906,514 + AO353_13115 0.39 -0.5
2,906,515 - AO353_13115 0.40 -1.4
2,906,515 - AO353_13115 0.40 -0.2
2,906,515 - AO353_13115 0.40 -0.5
2,906,515 - AO353_13115 0.40 +0.0
2,906,515 - AO353_13115 0.40 +0.3
2,906,515 - AO353_13115 0.40 -0.5
2,906,515 - AO353_13115 0.40 -0.2
2,906,515 - AO353_13115 0.40 +0.9
2,906,515 - AO353_13115 0.40 +0.6
2,906,515 - AO353_13115 0.40 -0.5
2,906,515 - AO353_13115 0.40 -1.1
2,906,515 - AO353_13115 0.40 -0.1
2,906,515 - AO353_13115 0.40 -0.5
2,906,515 - AO353_13115 0.40 +0.2
2,906,515 - AO353_13115 0.40 -1.1
2,906,515 - AO353_13115 0.40 -0.5
2,906,515 - AO353_13115 0.40 -0.1
2,906,515 - +1.3
2,906,515 - AO353_13115 0.40 +1.3
2,906,515 - AO353_13115 0.40 -0.4
2,906,515 - AO353_13115 0.40 +0.7
2,906,515 - AO353_13115 0.40 +0.1
2,906,518 + AO353_13115 0.40 +1.9
2,906,518 + AO353_13115 0.40 -0.3
2,906,518 + AO353_13115 0.40 -0.3
2,906,518 + AO353_13115 0.40 -0.3
2,906,519 - AO353_13115 0.40 -0.7
2,906,519 - AO353_13115 0.40 -0.2
2,906,519 - AO353_13115 0.40 +0.1
2,906,519 - AO353_13115 0.40 -1.5
2,906,519 - AO353_13115 0.40 +0.0
2,906,519 - AO353_13115 0.40 +0.1
2,906,519 - AO353_13115 0.40 -0.2
2,906,519 - AO353_13115 0.40 +0.5
2,906,644 + AO353_13115 0.52 +0.5
2,906,644 + AO353_13115 0.52 -1.1
2,906,644 + AO353_13115 0.52 -1.4
2,906,644 + AO353_13115 0.52 +0.1
2,906,644 + AO353_13115 0.52 +0.1
2,906,644 + AO353_13115 0.52 +0.5
2,906,645 - AO353_13115 0.52 -1.1
2,906,645 - AO353_13115 0.52 +0.1
2,906,645 - AO353_13115 0.52 -1.5
2,906,645 - AO353_13115 0.52 -0.3
2,906,645 - AO353_13115 0.52 +0.1
2,906,645 - AO353_13115 0.52 -0.5
2,906,645 - AO353_13115 0.52 +0.5
2,906,667 + AO353_13115 0.54 -0.2
2,906,667 + AO353_13115 0.54 -0.9
2,906,845 + AO353_13115 0.71 -0.1
2,906,857 + AO353_13115 0.72 +1.9
2,906,857 + AO353_13115 0.72 -0.9
2,906,857 + AO353_13115 0.72 -2.8
2,906,857 + AO353_13115 0.72 -0.1
2,906,857 + AO353_13115 0.72 -0.0
2,906,857 + AO353_13115 0.72 +1.2
2,906,857 + AO353_13115 0.72 +0.1
2,906,857 + AO353_13115 0.72 +0.7
2,906,858 - AO353_13115 0.72 -1.5
2,906,858 - AO353_13115 0.72 -0.1
2,906,858 - AO353_13115 0.72 +1.1
2,906,858 - AO353_13115 0.72 -0.2
2,906,858 - AO353_13115 0.72 +0.9
2,906,858 - AO353_13115 0.72 -1.2
2,906,858 - AO353_13115 0.72 -1.5
2,906,911 + AO353_13115 0.77 -1.5
2,906,911 + AO353_13115 0.77 +0.2
2,906,911 + AO353_13115 0.77 +0.9
2,906,995 + AO353_13115 0.85 +0.5
2,906,995 + AO353_13115 0.85 -1.7
2,906,995 + AO353_13115 0.85 -2.1
2,906,995 + AO353_13115 0.85 +2.0
2,906,995 + AO353_13115 0.85 +0.1
2,906,996 - AO353_13115 0.85 -0.9
2,906,996 - AO353_13115 0.85 +0.0
2,906,996 - AO353_13115 0.85 -0.5

Or see this region's nucleotide sequence