Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_11455

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_11445 and AO353_11450 are separated by 287 nucleotidesAO353_11450 and AO353_11455 are separated by 208 nucleotidesAO353_11455 and AO353_11460 are separated by 222 nucleotides AO353_11445: AO353_11445 - hypothetical protein, at 2,530,385 to 2,531,983 _11445 AO353_11450: AO353_11450 - hypothetical protein, at 2,532,271 to 2,532,498 _11450 AO353_11455: AO353_11455 - hypothetical protein, at 2,532,707 to 2,532,970 _11455 AO353_11460: AO353_11460 - hypothetical protein, at 2,533,193 to 2,534,050 _11460 Position (kb) 2532 2533Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2531.751 kb on + strand, within AO353_11445at 2531.772 kb on + strand, within AO353_11445at 2531.773 kb on - strand, within AO353_11445at 2531.859 kb on + strandat 2531.860 kb on - strandat 2531.872 kb on + strandat 2531.872 kb on + strandat 2531.873 kb on - strandat 2531.988 kb on - strandat 2531.991 kb on + strandat 2531.991 kb on + strandat 2531.992 kb on - strandat 2531.995 kb on + strandat 2532.015 kb on - strandat 2532.060 kb on + strandat 2532.111 kb on - strandat 2532.180 kb on - strandat 2532.257 kb on + strandat 2532.291 kb on + strandat 2532.334 kb on - strand, within AO353_11450at 2532.365 kb on + strand, within AO353_11450at 2532.366 kb on - strand, within AO353_11450at 2532.366 kb on - strand, within AO353_11450at 2532.400 kb on + strand, within AO353_11450at 2532.401 kb on - strand, within AO353_11450at 2532.401 kb on - strand, within AO353_11450at 2532.401 kb on - strand, within AO353_11450at 2532.409 kb on - strand, within AO353_11450at 2532.410 kb on + strand, within AO353_11450at 2532.411 kb on - strand, within AO353_11450at 2532.411 kb on - strand, within AO353_11450at 2532.411 kb on - strand, within AO353_11450at 2532.411 kb on - strand, within AO353_11450at 2532.412 kb on + strand, within AO353_11450at 2532.413 kb on - strand, within AO353_11450at 2532.413 kb on - strand, within AO353_11450at 2532.434 kb on + strand, within AO353_11450at 2532.463 kb on - strand, within AO353_11450at 2532.481 kb on - strandat 2532.499 kb on + strandat 2532.499 kb on + strandat 2532.499 kb on + strandat 2532.500 kb on - strandat 2532.500 kb on - strandat 2532.556 kb on - strandat 2532.593 kb on + strandat 2532.598 kb on - strandat 2532.598 kb on - strandat 2532.645 kb on + strandat 2532.862 kb on + strand, within AO353_11455at 2532.862 kb on + strand, within AO353_11455at 2532.863 kb on - strand, within AO353_11455at 2532.924 kb on + strand, within AO353_11455at 2532.930 kb on + strand, within AO353_11455at 2533.008 kb on + strandat 2533.009 kb on - strandat 2533.029 kb on + strandat 2533.030 kb on - strandat 2533.030 kb on - strandat 2533.050 kb on - strandat 2533.050 kb on - strandat 2533.065 kb on - strandat 2533.089 kb on + strandat 2533.120 kb on + strandat 2533.144 kb on + strandat 2533.206 kb on - strandat 2533.206 kb on - strandat 2533.286 kb on + strand, within AO353_11460at 2533.286 kb on + strand, within AO353_11460at 2533.286 kb on + strand, within AO353_11460at 2533.286 kb on + strand, within AO353_11460at 2533.286 kb on + strand, within AO353_11460at 2533.286 kb on + strand, within AO353_11460at 2533.287 kb on - strand, within AO353_11460at 2533.287 kb on - strand, within AO353_11460at 2533.287 kb on - strand, within AO353_11460at 2533.287 kb on - strand, within AO353_11460at 2533.301 kb on + strand, within AO353_11460at 2533.301 kb on + strand, within AO353_11460at 2533.329 kb on + strand, within AO353_11460at 2533.329 kb on + strand, within AO353_11460at 2533.330 kb on - strand, within AO353_11460at 2533.343 kb on + strand, within AO353_11460at 2533.344 kb on - strand, within AO353_11460at 2533.344 kb on - strand, within AO353_11460at 2533.381 kb on + strand, within AO353_11460at 2533.381 kb on + strand, within AO353_11460at 2533.381 kb on + strand, within AO353_11460at 2533.381 kb on + strand, within AO353_11460at 2533.381 kb on + strand, within AO353_11460at 2533.381 kb on + strand, within AO353_11460at 2533.382 kb on - strand, within AO353_11460at 2533.382 kb on - strand, within AO353_11460at 2533.382 kb on - strand, within AO353_11460at 2533.382 kb on - strand, within AO353_11460at 2533.397 kb on + strand, within AO353_11460at 2533.397 kb on + strand, within AO353_11460at 2533.397 kb on + strand, within AO353_11460at 2533.397 kb on + strand, within AO353_11460at 2533.397 kb on + strand, within AO353_11460at 2533.397 kb on + strand, within AO353_11460at 2533.397 kb on + strand, within AO353_11460at 2533.398 kb on - strand, within AO353_11460at 2533.398 kb on - strand, within AO353_11460at 2533.398 kb on - strand, within AO353_11460at 2533.398 kb on - strand, within AO353_11460at 2533.398 kb on - strand, within AO353_11460at 2533.398 kb on - strand, within AO353_11460at 2533.398 kb on - strand, within AO353_11460at 2533.398 kb on - strand, within AO353_11460at 2533.398 kb on - strand, within AO353_11460at 2533.409 kb on + strand, within AO353_11460at 2533.409 kb on + strand, within AO353_11460at 2533.409 kb on + strand, within AO353_11460at 2533.409 kb on + strand, within AO353_11460at 2533.409 kb on + strand, within AO353_11460at 2533.409 kb on + strand, within AO353_11460at 2533.409 kb on + strand, within AO353_11460at 2533.410 kb on - strand, within AO353_11460at 2533.410 kb on - strand, within AO353_11460at 2533.410 kb on - strand, within AO353_11460at 2533.410 kb on - strand, within AO353_11460at 2533.410 kb on - strand, within AO353_11460at 2533.410 kb on - strand, within AO353_11460at 2533.410 kb on - strand, within AO353_11460at 2533.410 kb on - strand, within AO353_11460at 2533.410 kb on - strand, within AO353_11460at 2533.410 kb on - strand, within AO353_11460at 2533.497 kb on - strand, within AO353_11460at 2533.627 kb on - strand, within AO353_11460at 2533.643 kb on + strand, within AO353_11460at 2533.644 kb on - strand, within AO353_11460at 2533.644 kb on - strand, within AO353_11460at 2533.644 kb on - strand, within AO353_11460at 2533.814 kb on + strand, within AO353_11460at 2533.815 kb on - strand, within AO353_11460at 2533.815 kb on - strand, within AO353_11460at 2533.815 kb on - strand, within AO353_11460at 2533.815 kb on - strand, within AO353_11460at 2533.858 kb on + strand, within AO353_11460at 2533.922 kb on + strand, within AO353_11460at 2533.922 kb on + strand, within AO353_11460at 2533.922 kb on + strand, within AO353_11460at 2533.922 kb on + strand, within AO353_11460at 2533.922 kb on + strand, within AO353_11460at 2533.922 kb on + strand, within AO353_11460at 2533.922 kb on + strand, within AO353_11460at 2533.923 kb on - strand, within AO353_11460at 2533.923 kb on - strand, within AO353_11460at 2533.923 kb on - strand, within AO353_11460at 2533.923 kb on - strand, within AO353_11460at 2533.925 kb on + strand, within AO353_11460at 2533.925 kb on + strand, within AO353_11460at 2533.925 kb on + strand, within AO353_11460at 2533.925 kb on + strand, within AO353_11460at 2533.925 kb on + strand, within AO353_11460at 2533.925 kb on + strand, within AO353_11460at 2533.925 kb on + strand, within AO353_11460at 2533.925 kb on + strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.926 kb on - strand, within AO353_11460at 2533.927 kb on + strand, within AO353_11460at 2533.927 kb on + strand, within AO353_11460at 2533.927 kb on + strand, within AO353_11460at 2533.927 kb on + strand, within AO353_11460at 2533.927 kb on + strand, within AO353_11460at 2533.927 kb on + strand, within AO353_11460at 2533.927 kb on + strand, within AO353_11460at 2533.927 kb on + strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.928 kb on - strand, within AO353_11460at 2533.944 kb on + strand, within AO353_11460at 2533.944 kb on + strand, within AO353_11460at 2533.945 kb on - strand, within AO353_11460at 2533.945 kb on - strand, within AO353_11460at 2533.945 kb on - strand, within AO353_11460at 2533.945 kb on - strand, within AO353_11460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
2,531,751 + AO353_11445 0.85 +0.3
2,531,772 + AO353_11445 0.87 +0.1
2,531,773 - AO353_11445 0.87 -2.5
2,531,859 + -0.1
2,531,860 - -0.6
2,531,872 + +0.2
2,531,872 + -1.1
2,531,873 - -1.3
2,531,988 - +0.7
2,531,991 + -0.4
2,531,991 + +1.3
2,531,992 - -3.0
2,531,995 + +0.1
2,532,015 - -0.4
2,532,060 + +0.6
2,532,111 - -0.4
2,532,180 - +0.9
2,532,257 + +0.3
2,532,291 + -0.7
2,532,334 - AO353_11450 0.28 +0.2
2,532,365 + AO353_11450 0.41 +0.0
2,532,366 - AO353_11450 0.42 +0.6
2,532,366 - AO353_11450 0.42 -0.1
2,532,400 + AO353_11450 0.57 -0.9
2,532,401 - AO353_11450 0.57 -1.5
2,532,401 - AO353_11450 0.57 +1.1
2,532,401 - AO353_11450 0.57 -0.7
2,532,409 - AO353_11450 0.61 +0.2
2,532,410 + AO353_11450 0.61 +1.1
2,532,411 - AO353_11450 0.61 -0.1
2,532,411 - AO353_11450 0.61 +1.5
2,532,411 - AO353_11450 0.61 +0.5
2,532,411 - AO353_11450 0.61 -0.0
2,532,412 + AO353_11450 0.62 -0.7
2,532,413 - AO353_11450 0.62 -1.1
2,532,413 - AO353_11450 0.62 +0.5
2,532,434 + AO353_11450 0.71 +1.4
2,532,463 - AO353_11450 0.84 +1.6
2,532,481 - -0.3
2,532,499 + -0.5
2,532,499 + -1.3
2,532,499 + +0.7
2,532,500 - +0.5
2,532,500 - +1.2
2,532,556 - +0.8
2,532,593 + +1.1
2,532,598 - +1.5
2,532,598 - +0.7
2,532,645 + -0.2
2,532,862 + AO353_11455 0.59 -0.5
2,532,862 + AO353_11455 0.59 -0.8
2,532,863 - AO353_11455 0.59 -1.6
2,532,924 + AO353_11455 0.82 -0.5
2,532,930 + AO353_11455 0.84 -0.5
2,533,008 + -2.3
2,533,009 - +0.5
2,533,029 + -1.1
2,533,030 - +0.3
2,533,030 - +0.4
2,533,050 - +0.4
2,533,050 - -0.5
2,533,065 - +1.1
2,533,089 + +0.3
2,533,120 + +0.2
2,533,144 + +0.2
2,533,206 - +1.2
2,533,206 - +0.9
2,533,286 + AO353_11460 0.11 -0.1
2,533,286 + AO353_11460 0.11 -0.9
2,533,286 + AO353_11460 0.11 -0.3
2,533,286 + AO353_11460 0.11 -0.4
2,533,286 + AO353_11460 0.11 +0.0
2,533,286 + AO353_11460 0.11 +1.1
2,533,287 - AO353_11460 0.11 -1.8
2,533,287 - AO353_11460 0.11 -0.7
2,533,287 - AO353_11460 0.11 +0.4
2,533,287 - AO353_11460 0.11 -1.4
2,533,301 + AO353_11460 0.13 -1.4
2,533,301 + AO353_11460 0.13 -1.0
2,533,329 + AO353_11460 0.16 -0.2
2,533,329 + AO353_11460 0.16 +1.0
2,533,330 - AO353_11460 0.16 +0.3
2,533,343 + AO353_11460 0.17 -1.2
2,533,344 - AO353_11460 0.18 +0.0
2,533,344 - AO353_11460 0.18 -0.1
2,533,381 + AO353_11460 0.22 +0.7
2,533,381 + AO353_11460 0.22 -0.3
2,533,381 + AO353_11460 0.22 -0.4
2,533,381 + AO353_11460 0.22 +0.4
2,533,381 + AO353_11460 0.22 -1.1
2,533,381 + AO353_11460 0.22 -0.1
2,533,382 - AO353_11460 0.22 +0.9
2,533,382 - AO353_11460 0.22 -0.0
2,533,382 - AO353_11460 0.22 +0.0
2,533,382 - AO353_11460 0.22 -0.3
2,533,397 + AO353_11460 0.24 -0.4
2,533,397 + AO353_11460 0.24 -0.1
2,533,397 + AO353_11460 0.24 +1.2
2,533,397 + AO353_11460 0.24 -1.3
2,533,397 + AO353_11460 0.24 -0.0
2,533,397 + AO353_11460 0.24 +0.1
2,533,397 + AO353_11460 0.24 -0.7
2,533,398 - AO353_11460 0.24 -1.1
2,533,398 - AO353_11460 0.24 +1.1
2,533,398 - AO353_11460 0.24 +0.4
2,533,398 - AO353_11460 0.24 +2.1
2,533,398 - AO353_11460 0.24 +0.5
2,533,398 - AO353_11460 0.24 +0.5
2,533,398 - AO353_11460 0.24 -2.7
2,533,398 - AO353_11460 0.24 +1.2
2,533,398 - AO353_11460 0.24 +0.8
2,533,409 + AO353_11460 0.25 -0.8
2,533,409 + AO353_11460 0.25 -1.4
2,533,409 + AO353_11460 0.25 -0.5
2,533,409 + AO353_11460 0.25 +0.2
2,533,409 + AO353_11460 0.25 -0.8
2,533,409 + AO353_11460 0.25 -0.4
2,533,409 + AO353_11460 0.25 +1.8
2,533,410 - AO353_11460 0.25 +1.7
2,533,410 - AO353_11460 0.25 +1.0
2,533,410 - AO353_11460 0.25 +0.1
2,533,410 - AO353_11460 0.25 +1.1
2,533,410 - AO353_11460 0.25 -0.1
2,533,410 - AO353_11460 0.25 -2.1
2,533,410 - AO353_11460 0.25 -0.1
2,533,410 - AO353_11460 0.25 +0.5
2,533,410 - AO353_11460 0.25 -0.3
2,533,410 - AO353_11460 0.25 +1.1
2,533,497 - AO353_11460 0.35 +0.5
2,533,627 - AO353_11460 0.51 -0.9
2,533,643 + AO353_11460 0.52 -1.1
2,533,644 - AO353_11460 0.53 +1.1
2,533,644 - AO353_11460 0.53 -1.1
2,533,644 - AO353_11460 0.53 -1.6
2,533,814 + AO353_11460 0.72 +0.0
2,533,815 - AO353_11460 0.72 +0.5
2,533,815 - AO353_11460 0.72 -0.5
2,533,815 - AO353_11460 0.72 -1.5
2,533,815 - AO353_11460 0.72 +0.2
2,533,858 + AO353_11460 0.78 +0.4
2,533,922 + AO353_11460 0.85 +1.6
2,533,922 + AO353_11460 0.85 -0.1
2,533,922 + AO353_11460 0.85 +0.7
2,533,922 + AO353_11460 0.85 -0.0
2,533,922 + AO353_11460 0.85 -0.2
2,533,922 + AO353_11460 0.85 +0.6
2,533,922 + AO353_11460 0.85 -1.0
2,533,923 - AO353_11460 0.85 +0.7
2,533,923 - AO353_11460 0.85 +0.1
2,533,923 - AO353_11460 0.85 -0.3
2,533,923 - AO353_11460 0.85 +1.0
2,533,925 + AO353_11460 0.85 +0.1
2,533,925 + AO353_11460 0.85 -0.1
2,533,925 + AO353_11460 0.85 +1.1
2,533,925 + AO353_11460 0.85 -0.0
2,533,925 + AO353_11460 0.85 +0.6
2,533,925 + AO353_11460 0.85 -1.4
2,533,925 + AO353_11460 0.85 -1.1
2,533,925 + AO353_11460 0.85 -1.4
2,533,926 - AO353_11460 0.85 -0.4
2,533,926 - AO353_11460 0.85 +0.5
2,533,926 - AO353_11460 0.85 +0.2
2,533,926 - AO353_11460 0.85 +1.5
2,533,926 - AO353_11460 0.85 +0.4
2,533,926 - AO353_11460 0.85 -0.5
2,533,926 - AO353_11460 0.85 -0.5
2,533,926 - AO353_11460 0.85 +0.2
2,533,926 - AO353_11460 0.85 -1.8
2,533,926 - AO353_11460 0.85 -1.0
2,533,926 - AO353_11460 0.85 +0.4
2,533,927 + AO353_11460 0.86 -1.3
2,533,927 + AO353_11460 0.86 +0.1
2,533,927 + AO353_11460 0.86 -0.2
2,533,927 + AO353_11460 0.86 -1.6
2,533,927 + AO353_11460 0.86 -0.5
2,533,927 + AO353_11460 0.86 -0.2
2,533,927 + AO353_11460 0.86 +0.5
2,533,927 + AO353_11460 0.86 -0.2
2,533,928 - AO353_11460 0.86 -0.3
2,533,928 - AO353_11460 0.86 +0.1
2,533,928 - AO353_11460 0.86 +0.4
2,533,928 - AO353_11460 0.86 -2.2
2,533,928 - AO353_11460 0.86 -1.3
2,533,928 - AO353_11460 0.86 +1.1
2,533,928 - AO353_11460 0.86 -0.9
2,533,928 - AO353_11460 0.86 +0.2
2,533,928 - AO353_11460 0.86 +0.9
2,533,928 - AO353_11460 0.86 -0.2
2,533,928 - AO353_11460 0.86 +1.4
2,533,944 + AO353_11460 0.88 +0.2
2,533,944 + AO353_11460 0.88 -0.9
2,533,945 - AO353_11460 0.88 +0.1
2,533,945 - AO353_11460 0.88 +0.6
2,533,945 - AO353_11460 0.88 +0.3
2,533,945 - AO353_11460 0.88 +0.9

Or see this region's nucleotide sequence