Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_07970 and AO353_07975 are separated by 95 nucleotides AO353_07975 and AO353_07980 are separated by 182 nucleotides AO353_07980 and AO353_07985 are separated by 128 nucleotides
AO353_07970: AO353_07970 - aromatic ring-opening dioxygenase LigA, at 1,757,835 to 1,759,517
_07970
AO353_07975: AO353_07975 - hypothetical protein, at 1,759,613 to 1,760,008
_07975
AO353_07980: AO353_07980 - cytochrome C, at 1,760,191 to 1,760,640
_07980
AO353_07985: AO353_07985 - transglycosylase, at 1,760,769 to 1,761,941
_07985
Position (kb)
1760
1761 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1759.229 kb on + strand, within AO353_07970 at 1759.230 kb on - strand, within AO353_07970 at 1759.230 kb on - strand, within AO353_07970 at 1759.372 kb on + strand at 1759.372 kb on + strand at 1759.372 kb on + strand at 1759.372 kb on + strand at 1759.372 kb on + strand at 1759.373 kb on - strand at 1759.373 kb on - strand at 1759.373 kb on - strand at 1759.489 kb on + strand at 1759.489 kb on + strand at 1759.490 kb on - strand at 1759.490 kb on - strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.515 kb on + strand at 1759.516 kb on - strand at 1759.516 kb on - strand at 1759.516 kb on - strand at 1759.516 kb on - strand at 1759.516 kb on - strand at 1759.516 kb on - strand at 1759.519 kb on + strand at 1759.519 kb on + strand at 1759.519 kb on + strand at 1759.519 kb on + strand at 1759.519 kb on + strand at 1759.519 kb on + strand at 1759.519 kb on + strand at 1759.519 kb on + strand at 1759.520 kb on - strand at 1759.520 kb on - strand at 1759.520 kb on - strand at 1759.552 kb on + strand at 1760.003 kb on - strand at 1760.003 kb on - strand at 1760.003 kb on - strand at 1760.003 kb on - strand at 1760.006 kb on + strand at 1760.006 kb on + strand at 1760.006 kb on + strand at 1760.006 kb on + strand at 1760.006 kb on + strand at 1760.007 kb on - strand at 1760.007 kb on - strand at 1760.007 kb on - strand at 1760.007 kb on - strand at 1760.007 kb on - strand at 1760.007 kb on - strand at 1760.007 kb on - strand at 1760.173 kb on + strand at 1760.173 kb on + strand at 1760.173 kb on + strand at 1760.173 kb on + strand at 1760.173 kb on + strand at 1760.174 kb on - strand at 1760.174 kb on - strand at 1760.212 kb on - strand at 1760.223 kb on + strand at 1760.223 kb on + strand at 1760.223 kb on + strand at 1760.224 kb on - strand at 1760.224 kb on - strand at 1760.262 kb on + strand, within AO353_07980 at 1760.273 kb on + strand, within AO353_07980 at 1760.273 kb on + strand, within AO353_07980 at 1760.273 kb on + strand, within AO353_07980 at 1760.273 kb on + strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.274 kb on - strand, within AO353_07980 at 1760.484 kb on + strand, within AO353_07980 at 1760.484 kb on + strand, within AO353_07980 at 1760.484 kb on + strand, within AO353_07980 at 1760.484 kb on + strand, within AO353_07980 at 1760.485 kb on - strand, within AO353_07980 at 1760.485 kb on - strand, within AO353_07980 at 1760.485 kb on - strand, within AO353_07980 at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.614 kb on + strand at 1760.615 kb on - strand at 1760.615 kb on - strand at 1760.615 kb on - strand at 1760.615 kb on - strand at 1760.615 kb on - strand at 1760.615 kb on - strand at 1760.615 kb on - strand at 1760.615 kb on - strand at 1760.615 kb on - strand at 1760.615 kb on - strand at 1760.615 kb on - strand at 1760.631 kb on + strand at 1760.631 kb on + strand at 1760.700 kb on + strand at 1760.706 kb on + strand at 1760.707 kb on - strand at 1760.707 kb on - strand at 1760.707 kb on - strand at 1760.707 kb on - strand at 1760.707 kb on - strand at 1760.709 kb on + strand at 1760.710 kb on - strand at 1760.710 kb on - strand at 1760.710 kb on - strand at 1760.715 kb on + strand at 1760.715 kb on + strand at 1760.715 kb on + strand at 1760.716 kb on - strand at 1760.716 kb on - strand at 1760.763 kb on + strand at 1760.889 kb on + strand, within AO353_07985 at 1760.889 kb on + strand, within AO353_07985 at 1760.889 kb on + strand, within AO353_07985 at 1760.889 kb on + strand, within AO353_07985 at 1760.890 kb on - strand, within AO353_07985 at 1760.931 kb on - strand at 1761.081 kb on + strand, within AO353_07985 at 1761.132 kb on + strand, within AO353_07985 at 1761.132 kb on + strand, within AO353_07985 at 1761.132 kb on + strand, within AO353_07985 at 1761.133 kb on - strand, within AO353_07985 at 1761.133 kb on - strand, within AO353_07985 at 1761.133 kb on - strand, within AO353_07985 at 1761.133 kb on - strand, within AO353_07985 at 1761.144 kb on + strand, within AO353_07985 at 1761.189 kb on + strand, within AO353_07985 at 1761.189 kb on + strand, within AO353_07985 at 1761.189 kb on + strand, within AO353_07985 at 1761.234 kb on + strand, within AO353_07985 at 1761.235 kb on - strand, within AO353_07985 at 1761.235 kb on - strand, within AO353_07985 at 1761.294 kb on + strand, within AO353_07985 at 1761.294 kb on + strand, within AO353_07985 at 1761.295 kb on - strand, within AO353_07985 at 1761.379 kb on + strand, within AO353_07985 at 1761.379 kb on + strand, within AO353_07985 at 1761.379 kb on + strand, within AO353_07985 at 1761.379 kb on + strand, within AO353_07985 at 1761.380 kb on - strand, within AO353_07985 at 1761.380 kb on - strand, within AO353_07985 at 1761.438 kb on + strand, within AO353_07985 at 1761.439 kb on - strand, within AO353_07985 at 1761.585 kb on - strand, within AO353_07985 at 1761.594 kb on + strand, within AO353_07985 at 1761.594 kb on + strand, within AO353_07985 at 1761.594 kb on + strand, within AO353_07985 at 1761.594 kb on + strand, within AO353_07985 at 1761.594 kb on + strand, within AO353_07985 at 1761.595 kb on - strand, within AO353_07985 at 1761.595 kb on - strand, within AO353_07985 at 1761.595 kb on - strand, within AO353_07985 at 1761.595 kb on - strand, within AO353_07985 at 1761.595 kb on - strand, within AO353_07985
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 1,759,229 + AO353_07970 0.83 -1.8 1,759,230 - AO353_07970 0.83 +0.4 1,759,230 - AO353_07970 0.83 +0.9 1,759,372 + +2.0 1,759,372 + -0.1 1,759,372 + -0.0 1,759,372 + -1.2 1,759,372 + +0.8 1,759,373 - -0.1 1,759,373 - +1.6 1,759,373 - +1.7 1,759,489 + +0.5 1,759,489 + -0.4 1,759,490 - -0.8 1,759,490 - -0.3 1,759,515 + +0.2 1,759,515 + -1.9 1,759,515 + -0.8 1,759,515 + +1.5 1,759,515 + +0.0 1,759,515 + +1.0 1,759,515 + -0.8 1,759,515 + -0.7 1,759,515 + -0.2 1,759,515 + -1.8 1,759,515 + +1.5 1,759,515 + +0.2 1,759,516 - +0.4 1,759,516 - -2.2 1,759,516 - -2.5 1,759,516 - -0.6 1,759,516 - -0.3 1,759,516 - +0.8 1,759,519 + +0.5 1,759,519 + +0.3 1,759,519 + +0.2 1,759,519 + +0.0 1,759,519 + +0.9 1,759,519 + +0.3 1,759,519 + -0.3 1,759,519 + -1.0 1,759,520 - -0.9 1,759,520 - +1.1 1,759,520 - +2.2 1,759,552 + +0.3 1,760,003 - -1.7 1,760,003 - -0.8 1,760,003 - +1.5 1,760,003 - +0.8 1,760,006 + -0.1 1,760,006 + +0.1 1,760,006 + -0.6 1,760,006 + -1.2 1,760,006 + -0.2 1,760,007 - +0.6 1,760,007 - +0.8 1,760,007 - -0.2 1,760,007 - -0.8 1,760,007 - +0.3 1,760,007 - +0.6 1,760,007 - -1.0 1,760,173 + -2.4 1,760,173 + -0.5 1,760,173 + -0.4 1,760,173 + -0.1 1,760,173 + -0.6 1,760,174 - -0.5 1,760,174 - -0.2 1,760,212 - +1.1 1,760,223 + -0.1 1,760,223 + -1.2 1,760,223 + +0.8 1,760,224 - +1.6 1,760,224 - +0.5 1,760,262 + AO353_07980 0.16 +0.0 1,760,273 + AO353_07980 0.18 +0.7 1,760,273 + AO353_07980 0.18 +1.1 1,760,273 + AO353_07980 0.18 -0.2 1,760,273 + AO353_07980 0.18 +0.1 1,760,274 - AO353_07980 0.18 -0.7 1,760,274 - AO353_07980 0.18 +1.3 1,760,274 - AO353_07980 0.18 +0.9 1,760,274 - AO353_07980 0.18 -0.5 1,760,274 - AO353_07980 0.18 +1.1 1,760,274 - AO353_07980 0.18 -0.3 1,760,274 - AO353_07980 0.18 +0.2 1,760,274 - AO353_07980 0.18 +1.4 1,760,274 - AO353_07980 0.18 +0.7 1,760,274 - AO353_07980 0.18 +1.7 1,760,274 - AO353_07980 0.18 -0.1 1,760,484 + AO353_07980 0.65 +1.7 1,760,484 + AO353_07980 0.65 +0.4 1,760,484 + AO353_07980 0.65 +1.1 1,760,484 + AO353_07980 0.65 -0.4 1,760,485 - AO353_07980 0.65 +1.0 1,760,485 - AO353_07980 0.65 -0.7 1,760,485 - AO353_07980 0.65 +0.7 1,760,614 + +0.9 1,760,614 + -1.2 1,760,614 + -0.3 1,760,614 + +1.3 1,760,614 + -0.2 1,760,614 + +0.1 1,760,614 + +1.2 1,760,614 + +1.4 1,760,614 + -0.3 1,760,614 + -0.3 1,760,614 + +0.6 1,760,614 + +1.2 1,760,614 + -0.6 1,760,615 - +1.4 1,760,615 - +0.4 1,760,615 - +0.8 1,760,615 - -0.0 1,760,615 - -1.4 1,760,615 - +1.1 1,760,615 - -0.3 1,760,615 - -0.3 1,760,615 - -0.6 1,760,615 - +0.6 1,760,615 - -0.9 1,760,631 + +1.2 1,760,631 + -2.0 1,760,700 + -1.2 1,760,706 + -0.2 1,760,707 - +0.3 1,760,707 - +1.3 1,760,707 - +0.2 1,760,707 - +1.7 1,760,707 - +0.1 1,760,709 + -0.6 1,760,710 - +0.4 1,760,710 - -0.1 1,760,710 - -2.4 1,760,715 + +0.9 1,760,715 + +0.1 1,760,715 + +0.3 1,760,716 - -1.1 1,760,716 - -0.2 1,760,763 + +1.1 1,760,889 + AO353_07985 0.10 -0.8 1,760,889 + AO353_07985 0.10 +0.6 1,760,889 + AO353_07985 0.10 -1.0 1,760,889 + AO353_07985 0.10 -0.4 1,760,890 - AO353_07985 0.10 +0.6 1,760,931 - +0.4 1,761,081 + AO353_07985 0.27 +1.6 1,761,132 + AO353_07985 0.31 -0.4 1,761,132 + AO353_07985 0.31 -0.8 1,761,132 + AO353_07985 0.31 -0.2 1,761,133 - AO353_07985 0.31 +0.3 1,761,133 - AO353_07985 0.31 -0.0 1,761,133 - AO353_07985 0.31 +2.2 1,761,133 - AO353_07985 0.31 -1.5 1,761,144 + AO353_07985 0.32 -0.9 1,761,189 + AO353_07985 0.36 -1.8 1,761,189 + AO353_07985 0.36 +0.5 1,761,189 + AO353_07985 0.36 -0.1 1,761,234 + AO353_07985 0.40 -0.0 1,761,235 - AO353_07985 0.40 -0.9 1,761,235 - AO353_07985 0.40 +0.2 1,761,294 + AO353_07985 0.45 -1.2 1,761,294 + AO353_07985 0.45 -1.3 1,761,295 - AO353_07985 0.45 -1.2 1,761,379 + AO353_07985 0.52 +0.4 1,761,379 + AO353_07985 0.52 -0.5 1,761,379 + AO353_07985 0.52 -0.6 1,761,379 + AO353_07985 0.52 +0.0 1,761,380 - AO353_07985 0.52 -0.8 1,761,380 - AO353_07985 0.52 -2.0 1,761,438 + AO353_07985 0.57 +2.0 1,761,439 - AO353_07985 0.57 -0.3 1,761,585 - AO353_07985 0.70 -0.0 1,761,594 + AO353_07985 0.70 +0.2 1,761,594 + AO353_07985 0.70 -0.3 1,761,594 + AO353_07985 0.70 +0.1 1,761,594 + AO353_07985 0.70 -1.6 1,761,594 + AO353_07985 0.70 -0.8 1,761,595 - AO353_07985 0.70 -0.7 1,761,595 - AO353_07985 0.70 -1.4 1,761,595 - AO353_07985 0.70 -0.2 1,761,595 - AO353_07985 0.70 +1.1 1,761,595 - AO353_07985 0.70 +0.5
Or see this region's nucleotide sequence