Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_07980

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_07970 and AO353_07975 are separated by 95 nucleotidesAO353_07975 and AO353_07980 are separated by 182 nucleotidesAO353_07980 and AO353_07985 are separated by 128 nucleotides AO353_07970: AO353_07970 - aromatic ring-opening dioxygenase LigA, at 1,757,835 to 1,759,517 _07970 AO353_07975: AO353_07975 - hypothetical protein, at 1,759,613 to 1,760,008 _07975 AO353_07980: AO353_07980 - cytochrome C, at 1,760,191 to 1,760,640 _07980 AO353_07985: AO353_07985 - transglycosylase, at 1,760,769 to 1,761,941 _07985 Position (kb) 1760 1761Strain fitness (log2 ratio) -2 -1 0 1 2at 1759.229 kb on + strand, within AO353_07970at 1759.230 kb on - strand, within AO353_07970at 1759.230 kb on - strand, within AO353_07970at 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.372 kb on + strandat 1759.373 kb on - strandat 1759.373 kb on - strandat 1759.373 kb on - strandat 1759.489 kb on + strandat 1759.489 kb on + strandat 1759.490 kb on - strandat 1759.490 kb on - strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.515 kb on + strandat 1759.516 kb on - strandat 1759.516 kb on - strandat 1759.516 kb on - strandat 1759.516 kb on - strandat 1759.516 kb on - strandat 1759.516 kb on - strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.519 kb on + strandat 1759.520 kb on - strandat 1759.520 kb on - strandat 1759.520 kb on - strandat 1759.552 kb on + strandat 1760.003 kb on - strandat 1760.003 kb on - strandat 1760.003 kb on - strandat 1760.003 kb on - strandat 1760.006 kb on + strandat 1760.006 kb on + strandat 1760.006 kb on + strandat 1760.006 kb on + strandat 1760.006 kb on + strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.007 kb on - strandat 1760.173 kb on + strandat 1760.173 kb on + strandat 1760.173 kb on + strandat 1760.173 kb on + strandat 1760.173 kb on + strandat 1760.174 kb on - strandat 1760.174 kb on - strandat 1760.212 kb on - strandat 1760.223 kb on + strandat 1760.223 kb on + strandat 1760.223 kb on + strandat 1760.224 kb on - strandat 1760.224 kb on - strandat 1760.262 kb on + strand, within AO353_07980at 1760.273 kb on + strand, within AO353_07980at 1760.273 kb on + strand, within AO353_07980at 1760.273 kb on + strand, within AO353_07980at 1760.273 kb on + strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.274 kb on - strand, within AO353_07980at 1760.484 kb on + strand, within AO353_07980at 1760.484 kb on + strand, within AO353_07980at 1760.484 kb on + strand, within AO353_07980at 1760.484 kb on + strand, within AO353_07980at 1760.485 kb on - strand, within AO353_07980at 1760.485 kb on - strand, within AO353_07980at 1760.485 kb on - strand, within AO353_07980at 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.614 kb on + strandat 1760.615 kb on - strandat 1760.615 kb on - strandat 1760.615 kb on - strandat 1760.615 kb on - strandat 1760.615 kb on - strandat 1760.615 kb on - strandat 1760.615 kb on - strandat 1760.615 kb on - strandat 1760.615 kb on - strandat 1760.615 kb on - strandat 1760.615 kb on - strandat 1760.631 kb on + strandat 1760.631 kb on + strandat 1760.700 kb on + strandat 1760.706 kb on + strandat 1760.707 kb on - strandat 1760.707 kb on - strandat 1760.707 kb on - strandat 1760.707 kb on - strandat 1760.707 kb on - strandat 1760.709 kb on + strandat 1760.710 kb on - strandat 1760.710 kb on - strandat 1760.710 kb on - strandat 1760.715 kb on + strandat 1760.715 kb on + strandat 1760.715 kb on + strandat 1760.716 kb on - strandat 1760.716 kb on - strandat 1760.763 kb on + strandat 1760.889 kb on + strand, within AO353_07985at 1760.889 kb on + strand, within AO353_07985at 1760.889 kb on + strand, within AO353_07985at 1760.889 kb on + strand, within AO353_07985at 1760.890 kb on - strand, within AO353_07985at 1760.931 kb on - strandat 1761.081 kb on + strand, within AO353_07985at 1761.132 kb on + strand, within AO353_07985at 1761.132 kb on + strand, within AO353_07985at 1761.132 kb on + strand, within AO353_07985at 1761.133 kb on - strand, within AO353_07985at 1761.133 kb on - strand, within AO353_07985at 1761.133 kb on - strand, within AO353_07985at 1761.133 kb on - strand, within AO353_07985at 1761.144 kb on + strand, within AO353_07985at 1761.189 kb on + strand, within AO353_07985at 1761.189 kb on + strand, within AO353_07985at 1761.189 kb on + strand, within AO353_07985at 1761.234 kb on + strand, within AO353_07985at 1761.235 kb on - strand, within AO353_07985at 1761.235 kb on - strand, within AO353_07985at 1761.294 kb on + strand, within AO353_07985at 1761.294 kb on + strand, within AO353_07985at 1761.295 kb on - strand, within AO353_07985at 1761.379 kb on + strand, within AO353_07985at 1761.379 kb on + strand, within AO353_07985at 1761.379 kb on + strand, within AO353_07985at 1761.379 kb on + strand, within AO353_07985at 1761.380 kb on - strand, within AO353_07985at 1761.380 kb on - strand, within AO353_07985at 1761.438 kb on + strand, within AO353_07985at 1761.439 kb on - strand, within AO353_07985at 1761.585 kb on - strand, within AO353_07985at 1761.594 kb on + strand, within AO353_07985at 1761.594 kb on + strand, within AO353_07985at 1761.594 kb on + strand, within AO353_07985at 1761.594 kb on + strand, within AO353_07985at 1761.594 kb on + strand, within AO353_07985at 1761.595 kb on - strand, within AO353_07985at 1761.595 kb on - strand, within AO353_07985at 1761.595 kb on - strand, within AO353_07985at 1761.595 kb on - strand, within AO353_07985at 1761.595 kb on - strand, within AO353_07985

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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1,759,229 + AO353_07970 0.83 -1.8
1,759,230 - AO353_07970 0.83 +0.4
1,759,230 - AO353_07970 0.83 +0.9
1,759,372 + +2.0
1,759,372 + -0.1
1,759,372 + -0.0
1,759,372 + -1.2
1,759,372 + +0.8
1,759,373 - -0.1
1,759,373 - +1.6
1,759,373 - +1.7
1,759,489 + +0.5
1,759,489 + -0.4
1,759,490 - -0.8
1,759,490 - -0.3
1,759,515 + +0.2
1,759,515 + -1.9
1,759,515 + -0.8
1,759,515 + +1.5
1,759,515 + +0.0
1,759,515 + +1.0
1,759,515 + -0.8
1,759,515 + -0.7
1,759,515 + -0.2
1,759,515 + -1.8
1,759,515 + +1.5
1,759,515 + +0.2
1,759,516 - +0.4
1,759,516 - -2.2
1,759,516 - -2.5
1,759,516 - -0.6
1,759,516 - -0.3
1,759,516 - +0.8
1,759,519 + +0.5
1,759,519 + +0.3
1,759,519 + +0.2
1,759,519 + +0.0
1,759,519 + +0.9
1,759,519 + +0.3
1,759,519 + -0.3
1,759,519 + -1.0
1,759,520 - -0.9
1,759,520 - +1.1
1,759,520 - +2.2
1,759,552 + +0.3
1,760,003 - -1.7
1,760,003 - -0.8
1,760,003 - +1.5
1,760,003 - +0.8
1,760,006 + -0.1
1,760,006 + +0.1
1,760,006 + -0.6
1,760,006 + -1.2
1,760,006 + -0.2
1,760,007 - +0.6
1,760,007 - +0.8
1,760,007 - -0.2
1,760,007 - -0.8
1,760,007 - +0.3
1,760,007 - +0.6
1,760,007 - -1.0
1,760,173 + -2.4
1,760,173 + -0.5
1,760,173 + -0.4
1,760,173 + -0.1
1,760,173 + -0.6
1,760,174 - -0.5
1,760,174 - -0.2
1,760,212 - +1.1
1,760,223 + -0.1
1,760,223 + -1.2
1,760,223 + +0.8
1,760,224 - +1.6
1,760,224 - +0.5
1,760,262 + AO353_07980 0.16 +0.0
1,760,273 + AO353_07980 0.18 +0.7
1,760,273 + AO353_07980 0.18 +1.1
1,760,273 + AO353_07980 0.18 -0.2
1,760,273 + AO353_07980 0.18 +0.1
1,760,274 - AO353_07980 0.18 -0.7
1,760,274 - AO353_07980 0.18 +1.3
1,760,274 - AO353_07980 0.18 +0.9
1,760,274 - AO353_07980 0.18 -0.5
1,760,274 - AO353_07980 0.18 +1.1
1,760,274 - AO353_07980 0.18 -0.3
1,760,274 - AO353_07980 0.18 +0.2
1,760,274 - AO353_07980 0.18 +1.4
1,760,274 - AO353_07980 0.18 +0.7
1,760,274 - AO353_07980 0.18 +1.7
1,760,274 - AO353_07980 0.18 -0.1
1,760,484 + AO353_07980 0.65 +1.7
1,760,484 + AO353_07980 0.65 +0.4
1,760,484 + AO353_07980 0.65 +1.1
1,760,484 + AO353_07980 0.65 -0.4
1,760,485 - AO353_07980 0.65 +1.0
1,760,485 - AO353_07980 0.65 -0.7
1,760,485 - AO353_07980 0.65 +0.7
1,760,614 + +0.9
1,760,614 + -1.2
1,760,614 + -0.3
1,760,614 + +1.3
1,760,614 + -0.2
1,760,614 + +0.1
1,760,614 + +1.2
1,760,614 + +1.4
1,760,614 + -0.3
1,760,614 + -0.3
1,760,614 + +0.6
1,760,614 + +1.2
1,760,614 + -0.6
1,760,615 - +1.4
1,760,615 - +0.4
1,760,615 - +0.8
1,760,615 - -0.0
1,760,615 - -1.4
1,760,615 - +1.1
1,760,615 - -0.3
1,760,615 - -0.3
1,760,615 - -0.6
1,760,615 - +0.6
1,760,615 - -0.9
1,760,631 + +1.2
1,760,631 + -2.0
1,760,700 + -1.2
1,760,706 + -0.2
1,760,707 - +0.3
1,760,707 - +1.3
1,760,707 - +0.2
1,760,707 - +1.7
1,760,707 - +0.1
1,760,709 + -0.6
1,760,710 - +0.4
1,760,710 - -0.1
1,760,710 - -2.4
1,760,715 + +0.9
1,760,715 + +0.1
1,760,715 + +0.3
1,760,716 - -1.1
1,760,716 - -0.2
1,760,763 + +1.1
1,760,889 + AO353_07985 0.10 -0.8
1,760,889 + AO353_07985 0.10 +0.6
1,760,889 + AO353_07985 0.10 -1.0
1,760,889 + AO353_07985 0.10 -0.4
1,760,890 - AO353_07985 0.10 +0.6
1,760,931 - +0.4
1,761,081 + AO353_07985 0.27 +1.6
1,761,132 + AO353_07985 0.31 -0.4
1,761,132 + AO353_07985 0.31 -0.8
1,761,132 + AO353_07985 0.31 -0.2
1,761,133 - AO353_07985 0.31 +0.3
1,761,133 - AO353_07985 0.31 -0.0
1,761,133 - AO353_07985 0.31 +2.2
1,761,133 - AO353_07985 0.31 -1.5
1,761,144 + AO353_07985 0.32 -0.9
1,761,189 + AO353_07985 0.36 -1.8
1,761,189 + AO353_07985 0.36 +0.5
1,761,189 + AO353_07985 0.36 -0.1
1,761,234 + AO353_07985 0.40 -0.0
1,761,235 - AO353_07985 0.40 -0.9
1,761,235 - AO353_07985 0.40 +0.2
1,761,294 + AO353_07985 0.45 -1.2
1,761,294 + AO353_07985 0.45 -1.3
1,761,295 - AO353_07985 0.45 -1.2
1,761,379 + AO353_07985 0.52 +0.4
1,761,379 + AO353_07985 0.52 -0.5
1,761,379 + AO353_07985 0.52 -0.6
1,761,379 + AO353_07985 0.52 +0.0
1,761,380 - AO353_07985 0.52 -0.8
1,761,380 - AO353_07985 0.52 -2.0
1,761,438 + AO353_07985 0.57 +2.0
1,761,439 - AO353_07985 0.57 -0.3
1,761,585 - AO353_07985 0.70 -0.0
1,761,594 + AO353_07985 0.70 +0.2
1,761,594 + AO353_07985 0.70 -0.3
1,761,594 + AO353_07985 0.70 +0.1
1,761,594 + AO353_07985 0.70 -1.6
1,761,594 + AO353_07985 0.70 -0.8
1,761,595 - AO353_07985 0.70 -0.7
1,761,595 - AO353_07985 0.70 -1.4
1,761,595 - AO353_07985 0.70 -0.2
1,761,595 - AO353_07985 0.70 +1.1
1,761,595 - AO353_07985 0.70 +0.5

Or see this region's nucleotide sequence