Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05395

Experiment: L-Serine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_05390 and AO353_05395 are separated by 74 nucleotidesAO353_05395 and AO353_05400 are separated by 10 nucleotidesAO353_05400 and AO353_05405 are separated by 10 nucleotides AO353_05390: AO353_05390 - peptide ABC transporter substrate-binding protein, at 1,187,898 to 1,189,493 _05390 AO353_05395: AO353_05395 - peptide ABC transporter permease, at 1,189,568 to 1,190,578 _05395 AO353_05400: AO353_05400 - peptide transporter, at 1,190,589 to 1,191,500 _05400 AO353_05405: AO353_05405 - peptide ABC transporter ATP-binding protein, at 1,191,511 to 1,192,479 _05405 Position (kb) 1189 1190 1191Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1188.576 kb on + strand, within AO353_05390at 1188.576 kb on + strand, within AO353_05390at 1188.576 kb on + strand, within AO353_05390at 1188.742 kb on + strand, within AO353_05390at 1188.762 kb on + strand, within AO353_05390at 1188.762 kb on + strand, within AO353_05390at 1188.762 kb on + strand, within AO353_05390at 1188.762 kb on + strand, within AO353_05390at 1188.763 kb on - strand, within AO353_05390at 1188.763 kb on - strand, within AO353_05390at 1188.763 kb on - strand, within AO353_05390at 1188.763 kb on - strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.789 kb on + strand, within AO353_05390at 1188.790 kb on - strand, within AO353_05390at 1188.790 kb on - strand, within AO353_05390at 1188.790 kb on - strand, within AO353_05390at 1188.790 kb on - strand, within AO353_05390at 1188.790 kb on - strand, within AO353_05390at 1188.790 kb on - strand, within AO353_05390at 1188.790 kb on - strand, within AO353_05390at 1188.790 kb on - strand, within AO353_05390at 1188.790 kb on - strand, within AO353_05390at 1188.846 kb on + strand, within AO353_05390at 1188.846 kb on + strand, within AO353_05390at 1188.846 kb on + strand, within AO353_05390at 1188.846 kb on + strand, within AO353_05390at 1188.847 kb on - strand, within AO353_05390at 1188.847 kb on - strand, within AO353_05390at 1188.847 kb on - strand, within AO353_05390at 1188.847 kb on - strand, within AO353_05390at 1188.847 kb on - strand, within AO353_05390at 1188.847 kb on - strand, within AO353_05390at 1188.847 kb on - strand, within AO353_05390at 1188.847 kb on - strand, within AO353_05390at 1188.861 kb on + strand, within AO353_05390at 1188.861 kb on + strand, within AO353_05390at 1188.861 kb on + strand, within AO353_05390at 1188.861 kb on + strand, within AO353_05390at 1188.862 kb on - strand, within AO353_05390at 1188.862 kb on - strand, within AO353_05390at 1188.862 kb on - strand, within AO353_05390at 1188.866 kb on + strand, within AO353_05390at 1188.998 kb on + strand, within AO353_05390at 1188.998 kb on + strand, within AO353_05390at 1188.999 kb on - strand, within AO353_05390at 1188.999 kb on - strand, within AO353_05390at 1189.098 kb on - strand, within AO353_05390at 1189.099 kb on + strand, within AO353_05390at 1189.099 kb on + strand, within AO353_05390at 1189.099 kb on + strand, within AO353_05390at 1189.100 kb on - strand, within AO353_05390at 1189.100 kb on - strand, within AO353_05390at 1189.100 kb on - strand, within AO353_05390at 1189.100 kb on - strand, within AO353_05390at 1189.100 kb on - strand, within AO353_05390at 1189.194 kb on - strand, within AO353_05390at 1189.260 kb on + strand, within AO353_05390at 1189.260 kb on + strand, within AO353_05390at 1189.261 kb on - strand, within AO353_05390at 1189.261 kb on - strand, within AO353_05390at 1189.345 kb on - strandat 1189.345 kb on - strandat 1189.408 kb on + strandat 1189.409 kb on - strandat 1189.413 kb on - strandat 1189.413 kb on - strandat 1189.424 kb on + strandat 1189.424 kb on + strandat 1189.425 kb on - strandat 1189.425 kb on - strandat 1189.476 kb on - strandat 1189.479 kb on - strandat 1189.491 kb on + strandat 1189.491 kb on + strandat 1189.491 kb on + strandat 1189.491 kb on - strandat 1189.492 kb on - strandat 1189.492 kb on - strandat 1189.492 kb on - strandat 1189.492 kb on - strandat 1189.492 kb on - strandat 1189.492 kb on - strandat 1189.492 kb on - strandat 1189.495 kb on + strandat 1189.496 kb on - strandat 1189.557 kb on + strandat 1189.557 kb on + strandat 1189.557 kb on + strandat 1189.557 kb on + strandat 1189.557 kb on + strandat 1189.557 kb on + strandat 1189.557 kb on + strandat 1189.558 kb on - strandat 1189.558 kb on - strandat 1189.558 kb on - strandat 1189.573 kb on + strandat 1189.573 kb on + strandat 1189.573 kb on + strandat 1189.574 kb on - strandat 1189.579 kb on + strandat 1189.579 kb on + strandat 1189.580 kb on - strandat 1189.580 kb on - strandat 1189.600 kb on - strandat 1189.754 kb on + strand, within AO353_05395at 1189.754 kb on + strand, within AO353_05395at 1189.754 kb on + strand, within AO353_05395at 1189.754 kb on + strand, within AO353_05395at 1189.754 kb on + strandat 1189.755 kb on - strand, within AO353_05395at 1189.755 kb on - strand, within AO353_05395at 1189.755 kb on - strand, within AO353_05395at 1189.763 kb on + strand, within AO353_05395at 1189.772 kb on + strand, within AO353_05395at 1189.772 kb on + strand, within AO353_05395at 1189.773 kb on - strand, within AO353_05395at 1189.773 kb on - strand, within AO353_05395at 1189.773 kb on - strand, within AO353_05395at 1189.773 kb on - strand, within AO353_05395at 1189.773 kb on - strand, within AO353_05395at 1189.773 kb on - strand, within AO353_05395at 1189.773 kb on - strand, within AO353_05395at 1189.830 kb on + strand, within AO353_05395at 1190.084 kb on + strand, within AO353_05395at 1190.084 kb on + strand, within AO353_05395at 1190.084 kb on + strand, within AO353_05395at 1190.084 kb on + strand, within AO353_05395at 1190.084 kb on + strand, within AO353_05395at 1190.084 kb on + strand, within AO353_05395at 1190.084 kb on + strand, within AO353_05395at 1190.085 kb on - strand, within AO353_05395at 1190.085 kb on - strand, within AO353_05395at 1190.264 kb on + strand, within AO353_05395at 1190.264 kb on + strand, within AO353_05395at 1190.264 kb on + strand, within AO353_05395at 1190.264 kb on + strand, within AO353_05395at 1190.264 kb on + strand, within AO353_05395at 1190.264 kb on + strand, within AO353_05395at 1190.264 kb on + strand, within AO353_05395at 1190.265 kb on - strand, within AO353_05395at 1190.265 kb on - strand, within AO353_05395at 1190.265 kb on - strand, within AO353_05395at 1190.265 kb on - strand, within AO353_05395at 1190.265 kb on - strand, within AO353_05395at 1190.265 kb on - strand, within AO353_05395at 1190.308 kb on - strand, within AO353_05395at 1190.364 kb on + strand, within AO353_05395at 1190.465 kb on + strand, within AO353_05395at 1190.465 kb on + strand, within AO353_05395at 1190.527 kb on - strandat 1190.533 kb on + strandat 1190.534 kb on - strandat 1190.540 kb on + strandat 1190.541 kb on - strandat 1190.584 kb on + strandat 1190.584 kb on + strandat 1190.584 kb on + strandat 1190.584 kb on + strandat 1190.584 kb on + strandat 1190.584 kb on + strandat 1190.585 kb on - strandat 1190.585 kb on - strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.588 kb on + strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.589 kb on - strandat 1190.594 kb on + strandat 1190.594 kb on + strandat 1190.594 kb on + strandat 1190.595 kb on - strandat 1190.595 kb on - strandat 1190.603 kb on + strandat 1190.646 kb on + strandat 1190.646 kb on + strandat 1190.646 kb on + strandat 1190.647 kb on - strandat 1190.647 kb on - strandat 1191.117 kb on + strand, within AO353_05400at 1191.117 kb on + strand, within AO353_05400at 1191.117 kb on + strand, within AO353_05400at 1191.117 kb on + strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.118 kb on - strand, within AO353_05400at 1191.165 kb on + strand, within AO353_05400at 1191.165 kb on + strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.166 kb on - strand, within AO353_05400at 1191.322 kb on + strand, within AO353_05400at 1191.322 kb on + strand, within AO353_05400at 1191.322 kb on + strand, within AO353_05400at 1191.323 kb on - strand, within AO353_05400at 1191.323 kb on - strand, within AO353_05400at 1191.323 kb on - strand, within AO353_05400at 1191.323 kb on - strand, within AO353_05400at 1191.323 kb on - strand, within AO353_05400at 1191.373 kb on - strand, within AO353_05400at 1191.373 kb on - strand, within AO353_05400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
remove
1,188,576 + AO353_05390 0.42 -0.0
1,188,576 + AO353_05390 0.42 -0.6
1,188,576 + AO353_05390 0.42 -2.4
1,188,742 + AO353_05390 0.53 -0.8
1,188,762 + AO353_05390 0.54 -2.2
1,188,762 + AO353_05390 0.54 -0.9
1,188,762 + AO353_05390 0.54 -0.1
1,188,762 + AO353_05390 0.54 +0.2
1,188,763 - AO353_05390 0.54 +0.6
1,188,763 - AO353_05390 0.54 +0.5
1,188,763 - AO353_05390 0.54 +0.0
1,188,763 - AO353_05390 0.54 -0.0
1,188,789 + AO353_05390 0.56 +0.8
1,188,789 + AO353_05390 0.56 -1.1
1,188,789 + AO353_05390 0.56 +0.0
1,188,789 + AO353_05390 0.56 +1.1
1,188,789 + AO353_05390 0.56 -1.2
1,188,789 + AO353_05390 0.56 -0.2
1,188,789 + AO353_05390 0.56 +2.5
1,188,789 + AO353_05390 0.56 +0.2
1,188,789 + AO353_05390 0.56 -0.8
1,188,789 + AO353_05390 0.56 +0.1
1,188,789 + AO353_05390 0.56 +0.5
1,188,789 + AO353_05390 0.56 +1.0
1,188,789 + AO353_05390 0.56 -0.4
1,188,789 + AO353_05390 0.56 -1.2
1,188,789 + AO353_05390 0.56 -0.8
1,188,789 + AO353_05390 0.56 -0.8
1,188,790 - AO353_05390 0.56 -0.1
1,188,790 - AO353_05390 0.56 -1.4
1,188,790 - AO353_05390 0.56 -0.2
1,188,790 - AO353_05390 0.56 -0.6
1,188,790 - AO353_05390 0.56 +0.8
1,188,790 - AO353_05390 0.56 -1.1
1,188,790 - AO353_05390 0.56 +1.8
1,188,790 - AO353_05390 0.56 -0.5
1,188,790 - AO353_05390 0.56 -0.1
1,188,846 + AO353_05390 0.59 +0.0
1,188,846 + AO353_05390 0.59 +0.2
1,188,846 + AO353_05390 0.59 +0.4
1,188,846 + AO353_05390 0.59 +0.2
1,188,847 - AO353_05390 0.59 +0.6
1,188,847 - AO353_05390 0.59 +0.1
1,188,847 - AO353_05390 0.59 +0.8
1,188,847 - AO353_05390 0.59 -1.5
1,188,847 - AO353_05390 0.59 -1.1
1,188,847 - AO353_05390 0.59 +0.7
1,188,847 - AO353_05390 0.59 -1.0
1,188,847 - AO353_05390 0.59 -0.9
1,188,861 + AO353_05390 0.60 +1.4
1,188,861 + AO353_05390 0.60 +0.7
1,188,861 + AO353_05390 0.60 +0.2
1,188,861 + AO353_05390 0.60 +0.0
1,188,862 - AO353_05390 0.60 +1.2
1,188,862 - AO353_05390 0.60 +0.2
1,188,862 - AO353_05390 0.60 -0.2
1,188,866 + AO353_05390 0.61 -2.0
1,188,998 + AO353_05390 0.69 +1.0
1,188,998 + AO353_05390 0.69 -0.8
1,188,999 - AO353_05390 0.69 -1.0
1,188,999 - AO353_05390 0.69 +1.8
1,189,098 - AO353_05390 0.75 -1.1
1,189,099 + AO353_05390 0.75 +1.2
1,189,099 + AO353_05390 0.75 -0.4
1,189,099 + AO353_05390 0.75 -1.2
1,189,100 - AO353_05390 0.75 -0.0
1,189,100 - AO353_05390 0.75 +0.1
1,189,100 - AO353_05390 0.75 +0.5
1,189,100 - AO353_05390 0.75 -1.3
1,189,100 - AO353_05390 0.75 -0.2
1,189,194 - AO353_05390 0.81 +0.0
1,189,260 + AO353_05390 0.85 +0.6
1,189,260 + AO353_05390 0.85 -0.0
1,189,261 - AO353_05390 0.85 -0.3
1,189,261 - AO353_05390 0.85 +0.4
1,189,345 - +0.1
1,189,345 - +0.3
1,189,408 + -0.7
1,189,409 - -1.2
1,189,413 - +0.1
1,189,413 - +0.4
1,189,424 + -2.3
1,189,424 + -1.3
1,189,425 - -0.6
1,189,425 - -0.1
1,189,476 - +0.4
1,189,479 - -2.0
1,189,491 + -0.1
1,189,491 + -0.1
1,189,491 + +0.4
1,189,491 - +0.9
1,189,492 - +0.4
1,189,492 - +0.1
1,189,492 - -1.0
1,189,492 - +0.9
1,189,492 - +0.1
1,189,492 - +1.0
1,189,492 - +1.0
1,189,495 + +0.5
1,189,496 - -0.9
1,189,557 + +1.0
1,189,557 + -0.1
1,189,557 + -0.0
1,189,557 + +0.4
1,189,557 + -0.5
1,189,557 + -0.1
1,189,557 + +0.8
1,189,558 - -0.5
1,189,558 - -1.2
1,189,558 - -1.3
1,189,573 + +0.3
1,189,573 + -0.2
1,189,573 + +0.0
1,189,574 - -1.2
1,189,579 + -0.1
1,189,579 + +0.4
1,189,580 - +2.1
1,189,580 - +0.6
1,189,600 - -0.6
1,189,754 + AO353_05395 0.18 -0.8
1,189,754 + AO353_05395 0.18 -0.9
1,189,754 + AO353_05395 0.18 +1.0
1,189,754 + AO353_05395 0.18 +1.6
1,189,754 + -0.6
1,189,755 - AO353_05395 0.18 -1.3
1,189,755 - AO353_05395 0.18 -0.6
1,189,755 - AO353_05395 0.18 -0.2
1,189,763 + AO353_05395 0.19 +0.6
1,189,772 + AO353_05395 0.20 +0.5
1,189,772 + AO353_05395 0.20 +1.8
1,189,773 - AO353_05395 0.20 +0.4
1,189,773 - AO353_05395 0.20 -0.2
1,189,773 - AO353_05395 0.20 +0.5
1,189,773 - AO353_05395 0.20 +1.2
1,189,773 - AO353_05395 0.20 -0.0
1,189,773 - AO353_05395 0.20 +1.3
1,189,773 - AO353_05395 0.20 +1.8
1,189,830 + AO353_05395 0.26 +0.8
1,190,084 + AO353_05395 0.51 -1.4
1,190,084 + AO353_05395 0.51 +0.5
1,190,084 + AO353_05395 0.51 +0.9
1,190,084 + AO353_05395 0.51 +0.0
1,190,084 + AO353_05395 0.51 +0.4
1,190,084 + AO353_05395 0.51 +0.8
1,190,084 + AO353_05395 0.51 +0.2
1,190,085 - AO353_05395 0.51 -1.0
1,190,085 - AO353_05395 0.51 +1.4
1,190,264 + AO353_05395 0.69 +1.4
1,190,264 + AO353_05395 0.69 +0.7
1,190,264 + AO353_05395 0.69 +0.3
1,190,264 + AO353_05395 0.69 -0.4
1,190,264 + AO353_05395 0.69 +1.0
1,190,264 + AO353_05395 0.69 +1.5
1,190,264 + AO353_05395 0.69 -2.2
1,190,265 - AO353_05395 0.69 -0.3
1,190,265 - AO353_05395 0.69 -0.3
1,190,265 - AO353_05395 0.69 +0.4
1,190,265 - AO353_05395 0.69 -0.6
1,190,265 - AO353_05395 0.69 -0.3
1,190,265 - AO353_05395 0.69 +0.2
1,190,308 - AO353_05395 0.73 +0.9
1,190,364 + AO353_05395 0.79 -0.0
1,190,465 + AO353_05395 0.89 +0.2
1,190,465 + AO353_05395 0.89 +2.2
1,190,527 - -0.0
1,190,533 + -3.0
1,190,534 - -0.1
1,190,540 + +0.2
1,190,541 - +0.8
1,190,584 + +0.1
1,190,584 + -2.4
1,190,584 + -0.8
1,190,584 + +0.6
1,190,584 + -0.1
1,190,584 + -1.0
1,190,585 - +0.7
1,190,585 - +1.1
1,190,588 + -1.8
1,190,588 + +0.2
1,190,588 + +0.2
1,190,588 + +0.9
1,190,588 + +0.6
1,190,588 + -0.7
1,190,588 + -1.2
1,190,588 + -0.3
1,190,588 + +0.2
1,190,588 + +2.8
1,190,588 + +1.0
1,190,588 + -0.5
1,190,588 + +0.1
1,190,588 + +0.8
1,190,588 + -0.3
1,190,588 + +0.5
1,190,588 + -0.4
1,190,588 + +0.4
1,190,588 + -0.0
1,190,588 + +0.3
1,190,588 + +0.5
1,190,588 + -0.9
1,190,589 - -0.3
1,190,589 - +1.8
1,190,589 - +0.1
1,190,589 - -0.3
1,190,589 - +0.9
1,190,589 - +0.0
1,190,589 - +1.2
1,190,589 - +1.2
1,190,589 - -0.2
1,190,589 - +0.6
1,190,589 - -0.3
1,190,589 - +1.4
1,190,589 - -0.0
1,190,589 - +1.8
1,190,589 - +0.1
1,190,589 - -0.1
1,190,589 - +1.9
1,190,589 - +0.8
1,190,589 - -0.4
1,190,589 - -0.6
1,190,594 + -0.1
1,190,594 + +0.4
1,190,594 + +0.2
1,190,595 - -1.8
1,190,595 - +0.4
1,190,603 + -0.0
1,190,646 + +0.2
1,190,646 + +1.1
1,190,646 + +0.2
1,190,647 - +0.5
1,190,647 - +0.1
1,191,117 + AO353_05400 0.58 -0.4
1,191,117 + AO353_05400 0.58 +2.1
1,191,117 + AO353_05400 0.58 -0.2
1,191,117 + AO353_05400 0.58 +0.4
1,191,118 - AO353_05400 0.58 +0.6
1,191,118 - AO353_05400 0.58 +0.0
1,191,118 - AO353_05400 0.58 -1.0
1,191,118 - AO353_05400 0.58 +0.0
1,191,118 - AO353_05400 0.58 +0.0
1,191,118 - AO353_05400 0.58 +0.3
1,191,165 + AO353_05400 0.63 -0.6
1,191,165 + AO353_05400 0.63 -0.6
1,191,166 - AO353_05400 0.63 +0.4
1,191,166 - AO353_05400 0.63 -1.9
1,191,166 - AO353_05400 0.63 +0.3
1,191,166 - AO353_05400 0.63 -0.1
1,191,166 - AO353_05400 0.63 +2.0
1,191,166 - AO353_05400 0.63 +0.5
1,191,166 - AO353_05400 0.63 +0.4
1,191,322 + AO353_05400 0.80 -0.6
1,191,322 + AO353_05400 0.80 -0.7
1,191,322 + AO353_05400 0.80 -0.3
1,191,323 - AO353_05400 0.80 +0.9
1,191,323 - AO353_05400 0.80 -0.6
1,191,323 - AO353_05400 0.80 +1.4
1,191,323 - AO353_05400 0.80 +1.5
1,191,323 - AO353_05400 0.80 +0.2
1,191,373 - AO353_05400 0.86 +0.3
1,191,373 - AO353_05400 0.86 +0.8

Or see this region's nucleotide sequence