Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03790 and AO353_03795 are separated by 491 nucleotides AO353_03795 and AO353_03800 are separated by 156 nucleotides
AO353_03790: AO353_03790 - hypothetical protein, at 808,932 to 810,038
_03790
AO353_03795: AO353_03795 - fumarate hydratase, at 810,530 to 812,053
_03795
AO353_03800: AO353_03800 - cytochrome C biogenesis protein CcmE, at 812,210 to 813,976
_03800
Position (kb) 810
811
812
813 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 809.536 kb on + strand, within AO353_03790 at 809.536 kb on + strand, within AO353_03790 at 809.536 kb on + strand, within AO353_03790 at 809.536 kb on + strand, within AO353_03790 at 809.537 kb on - strand, within AO353_03790 at 809.537 kb on - strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.538 kb on + strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.539 kb on - strand, within AO353_03790 at 809.561 kb on + strand, within AO353_03790 at 809.725 kb on + strand, within AO353_03790 at 809.725 kb on + strand, within AO353_03790 at 809.725 kb on + strand, within AO353_03790 at 809.725 kb on + strand, within AO353_03790 at 809.726 kb on - strand, within AO353_03790 at 809.726 kb on - strand, within AO353_03790 at 809.883 kb on + strand, within AO353_03790 at 809.883 kb on + strand, within AO353_03790 at 809.884 kb on - strand, within AO353_03790 at 809.884 kb on - strand, within AO353_03790 at 809.884 kb on - strand, within AO353_03790 at 809.929 kb on + strand at 809.930 kb on - strand at 809.930 kb on - strand at 809.965 kb on - strand at 809.965 kb on - strand at 809.965 kb on - strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.977 kb on + strand at 809.978 kb on - strand at 809.978 kb on - strand at 809.978 kb on - strand at 809.978 kb on - strand at 809.978 kb on - strand at 809.996 kb on + strand at 809.997 kb on - strand at 810.070 kb on + strand at 810.070 kb on + strand at 810.070 kb on + strand at 810.081 kb on + strand at 810.106 kb on + strand at 810.106 kb on + strand at 810.148 kb on - strand at 810.148 kb on - strand at 810.273 kb on + strand at 810.273 kb on + strand at 810.274 kb on - strand at 810.274 kb on - strand at 810.400 kb on + strand at 810.402 kb on + strand at 810.402 kb on + strand at 810.403 kb on - strand at 810.494 kb on + strand at 810.494 kb on + strand at 810.494 kb on + strand at 810.494 kb on + strand at 810.495 kb on - strand at 810.514 kb on + strand at 810.515 kb on - strand at 810.593 kb on + strand at 810.596 kb on + strand at 810.596 kb on + strand at 810.763 kb on - strand, within AO353_03795 at 810.763 kb on - strand, within AO353_03795 at 810.766 kb on + strand, within AO353_03795 at 810.767 kb on - strand, within AO353_03795 at 810.767 kb on - strand, within AO353_03795 at 810.767 kb on - strand, within AO353_03795 at 811.550 kb on - strand, within AO353_03795 at 811.647 kb on - strand, within AO353_03795 at 811.647 kb on - strand, within AO353_03795 at 811.647 kb on - strand, within AO353_03795 at 811.650 kb on - strand, within AO353_03795 at 811.829 kb on + strand, within AO353_03795 at 811.830 kb on - strand, within AO353_03795 at 811.856 kb on + strand, within AO353_03795 at 811.856 kb on + strand, within AO353_03795 at 811.857 kb on - strand, within AO353_03795 at 811.925 kb on + strand at 811.926 kb on - strand at 812.040 kb on + strand at 812.040 kb on + strand at 812.040 kb on + strand at 812.040 kb on + strand at 812.041 kb on - strand at 812.041 kb on - strand at 812.041 kb on - strand at 812.051 kb on + strand at 812.051 kb on + strand at 812.051 kb on + strand at 812.051 kb on + strand at 812.051 kb on + strand at 812.051 kb on + strand at 812.052 kb on - strand at 812.052 kb on - strand at 812.052 kb on - strand at 812.052 kb on - strand at 812.052 kb on - strand at 812.172 kb on + strand at 812.172 kb on + strand at 812.172 kb on + strand at 812.172 kb on + strand at 812.172 kb on + strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.173 kb on - strand at 812.188 kb on - strand at 812.204 kb on + strand at 812.205 kb on - strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.246 kb on + strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.247 kb on - strand at 812.249 kb on - strand at 812.249 kb on - strand at 812.361 kb on - strand at 812.421 kb on + strand, within AO353_03800 at 812.488 kb on + strand, within AO353_03800 at 812.488 kb on + strand, within AO353_03800 at 812.488 kb on + strand, within AO353_03800 at 812.591 kb on + strand, within AO353_03800 at 812.591 kb on + strand, within AO353_03800 at 812.591 kb on + strand, within AO353_03800 at 812.592 kb on - strand, within AO353_03800 at 812.592 kb on - strand, within AO353_03800 at 812.592 kb on - strand, within AO353_03800 at 812.592 kb on - strand, within AO353_03800 at 812.606 kb on + strand, within AO353_03800 at 812.606 kb on + strand, within AO353_03800 at 812.607 kb on - strand, within AO353_03800 at 812.607 kb on - strand, within AO353_03800 at 812.621 kb on + strand, within AO353_03800 at 812.622 kb on - strand, within AO353_03800 at 812.660 kb on + strand, within AO353_03800 at 812.829 kb on + strand, within AO353_03800 at 812.829 kb on + strand, within AO353_03800 at 812.829 kb on + strand, within AO353_03800 at 812.829 kb on + strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.830 kb on - strand, within AO353_03800 at 812.837 kb on - strand, within AO353_03800 at 812.921 kb on + strand, within AO353_03800 at 812.922 kb on - strand, within AO353_03800 at 812.922 kb on - strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.984 kb on + strand, within AO353_03800 at 812.985 kb on - strand, within AO353_03800 at 812.985 kb on - strand, within AO353_03800 at 812.985 kb on - strand, within AO353_03800 at 812.985 kb on - strand, within AO353_03800 at 812.985 kb on - strand, within AO353_03800 at 813.023 kb on + strand, within AO353_03800 at 813.023 kb on + strand, within AO353_03800 at 813.023 kb on + strand, within AO353_03800 at 813.024 kb on - strand, within AO353_03800 at 813.024 kb on - strand, within AO353_03800 at 813.024 kb on - strand, within AO353_03800 at 813.024 kb on - strand, within AO353_03800
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 809,536 + AO353_03790 0.55 -0.4 809,536 + AO353_03790 0.55 -1.4 809,536 + AO353_03790 0.55 -0.9 809,536 + AO353_03790 0.55 +0.1 809,537 - AO353_03790 0.55 +0.3 809,537 - AO353_03790 0.55 -0.4 809,538 + AO353_03790 0.55 -0.1 809,538 + AO353_03790 0.55 +1.0 809,538 + AO353_03790 0.55 +1.1 809,538 + AO353_03790 0.55 -0.9 809,538 + AO353_03790 0.55 -0.3 809,538 + AO353_03790 0.55 -1.7 809,538 + AO353_03790 0.55 +1.1 809,538 + AO353_03790 0.55 -0.2 809,539 - AO353_03790 0.55 -1.5 809,539 - AO353_03790 0.55 +0.3 809,539 - AO353_03790 0.55 -0.6 809,539 - AO353_03790 0.55 -0.2 809,539 - AO353_03790 0.55 +0.5 809,539 - +0.6 809,539 - AO353_03790 0.55 -0.1 809,539 - AO353_03790 0.55 +0.3 809,539 - AO353_03790 0.55 -0.5 809,561 + AO353_03790 0.57 -1.4 809,725 + AO353_03790 0.72 +0.6 809,725 + AO353_03790 0.72 -2.3 809,725 + AO353_03790 0.72 +0.8 809,725 + AO353_03790 0.72 +0.2 809,726 - AO353_03790 0.72 +0.8 809,726 - AO353_03790 0.72 +0.6 809,883 + AO353_03790 0.86 +0.6 809,883 + AO353_03790 0.86 -0.9 809,884 - AO353_03790 0.86 +0.3 809,884 - AO353_03790 0.86 -0.4 809,884 - AO353_03790 0.86 +0.4 809,929 + -1.1 809,930 - -1.8 809,930 - +0.9 809,965 - +0.6 809,965 - +2.6 809,965 - -0.1 809,977 + +0.4 809,977 + -0.6 809,977 + +0.7 809,977 + +1.3 809,977 + +0.4 809,977 + -0.1 809,977 + +1.2 809,977 + -0.7 809,977 + +1.2 809,978 - +0.7 809,978 - +0.6 809,978 - +2.6 809,978 - -0.2 809,978 - +0.1 809,996 + +0.3 809,997 - +0.3 810,070 + -1.6 810,070 + -0.4 810,070 + +2.1 810,081 + +0.1 810,106 + +0.6 810,106 + -0.7 810,148 - -0.4 810,148 - -1.8 810,273 + +0.2 810,273 + +0.4 810,274 - +0.6 810,274 - +0.6 810,400 + +0.5 810,402 + +0.9 810,402 + +0.2 810,403 - -2.6 810,494 + -0.9 810,494 + -0.6 810,494 + +0.3 810,494 + +1.2 810,495 - +1.3 810,514 + -1.2 810,515 - -0.2 810,593 + -0.7 810,596 + -2.4 810,596 + -1.6 810,763 - AO353_03795 0.15 -1.4 810,763 - AO353_03795 0.15 -0.2 810,766 + AO353_03795 0.15 -2.3 810,767 - AO353_03795 0.16 -1.9 810,767 - AO353_03795 0.16 -1.4 810,767 - AO353_03795 0.16 -2.4 811,550 - AO353_03795 0.67 -2.3 811,647 - AO353_03795 0.73 -2.8 811,647 - AO353_03795 0.73 -1.2 811,647 - AO353_03795 0.73 +0.5 811,650 - AO353_03795 0.73 -1.8 811,829 + AO353_03795 0.85 -1.2 811,830 - AO353_03795 0.85 -1.3 811,856 + AO353_03795 0.87 +1.6 811,856 + AO353_03795 0.87 -1.9 811,857 - AO353_03795 0.87 -1.2 811,925 + -1.4 811,926 - -0.4 812,040 + +0.2 812,040 + +0.9 812,040 + -0.9 812,040 + -1.5 812,041 - -1.4 812,041 - -1.2 812,041 - -0.9 812,051 + +1.1 812,051 + -0.1 812,051 + +1.1 812,051 + +0.5 812,051 + -0.4 812,051 + +0.6 812,052 - +0.4 812,052 - -0.1 812,052 - +0.2 812,052 - +0.3 812,052 - -2.9 812,172 + -0.4 812,172 + -0.4 812,172 + -0.4 812,172 + -2.7 812,172 + -0.7 812,173 - -0.1 812,173 - +1.1 812,173 - +0.5 812,173 - +0.1 812,173 - -1.1 812,173 - +0.4 812,173 - +0.4 812,188 - -0.8 812,204 + -0.6 812,205 - +1.0 812,246 + +0.3 812,246 + -0.3 812,246 + -0.6 812,246 + -0.4 812,246 + +0.5 812,246 + +0.0 812,246 + +1.9 812,247 - -0.7 812,247 - -1.1 812,247 - -0.4 812,247 - -0.4 812,247 - -0.9 812,247 - -0.6 812,247 - -0.4 812,247 - +1.5 812,247 - +0.2 812,249 - +1.0 812,249 - +0.4 812,361 - -0.1 812,421 + AO353_03800 0.12 -0.2 812,488 + AO353_03800 0.16 -0.9 812,488 + AO353_03800 0.16 -1.1 812,488 + AO353_03800 0.16 -0.1 812,591 + AO353_03800 0.22 -0.8 812,591 + AO353_03800 0.22 +1.1 812,591 + AO353_03800 0.22 +0.1 812,592 - AO353_03800 0.22 -0.5 812,592 - AO353_03800 0.22 -0.3 812,592 - AO353_03800 0.22 -1.3 812,592 - AO353_03800 0.22 +1.4 812,606 + AO353_03800 0.22 -0.7 812,606 + AO353_03800 0.22 -0.9 812,607 - AO353_03800 0.22 +0.5 812,607 - AO353_03800 0.22 +1.5 812,621 + AO353_03800 0.23 +0.1 812,622 - AO353_03800 0.23 -0.4 812,660 + AO353_03800 0.25 -1.7 812,829 + AO353_03800 0.35 -0.2 812,829 + AO353_03800 0.35 -0.6 812,829 + AO353_03800 0.35 +1.6 812,829 + AO353_03800 0.35 +1.3 812,830 - AO353_03800 0.35 +0.6 812,830 - AO353_03800 0.35 -1.4 812,830 - AO353_03800 0.35 +0.1 812,830 - AO353_03800 0.35 +0.7 812,830 - AO353_03800 0.35 +0.4 812,830 - AO353_03800 0.35 +1.6 812,830 - AO353_03800 0.35 -0.5 812,830 - AO353_03800 0.35 +0.9 812,830 - AO353_03800 0.35 +0.2 812,830 - AO353_03800 0.35 +2.0 812,837 - AO353_03800 0.35 +0.1 812,921 + AO353_03800 0.40 -0.1 812,922 - AO353_03800 0.40 +0.8 812,922 - AO353_03800 0.40 +1.0 812,984 + AO353_03800 0.44 +0.2 812,984 + AO353_03800 0.44 -0.3 812,984 + AO353_03800 0.44 -0.5 812,984 + AO353_03800 0.44 -0.5 812,984 + AO353_03800 0.44 -0.2 812,984 + AO353_03800 0.44 +0.2 812,984 + AO353_03800 0.44 +0.2 812,985 - AO353_03800 0.44 -0.4 812,985 - AO353_03800 0.44 -0.5 812,985 - AO353_03800 0.44 +0.4 812,985 - AO353_03800 0.44 -0.3 812,985 - AO353_03800 0.44 -0.0 813,023 + AO353_03800 0.46 +1.1 813,023 + AO353_03800 0.46 +1.0 813,023 + AO353_03800 0.46 +0.6 813,024 - AO353_03800 0.46 +0.6 813,024 - AO353_03800 0.46 -0.5 813,024 - AO353_03800 0.46 -0.6 813,024 - AO353_03800 0.46 -0.1
Or see this region's nucleotide sequence