Experiment: L-Serine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_00060 and AO353_00065 are separated by 174 nucleotides AO353_00065 and AO353_00070 are separated by 297 nucleotides
AO353_00060: AO353_00060 - purine nucleoside permease, at 12,190 to 13,224
_00060
AO353_00065: AO353_00065 - oxidoreductase, at 13,399 to 14,355
_00065
AO353_00070: AO353_00070 - AraC family transcriptional regulator, at 14,653 to 15,441
_00070
Position (kb) 13
14
15 Strain fitness (log2 ratio) -2
-1
0
1
2 at 12.405 kb on + strand, within AO353_00060 at 12.405 kb on + strand, within AO353_00060 at 12.508 kb on + strand, within AO353_00060 at 12.508 kb on + strand, within AO353_00060 at 12.509 kb on - strand, within AO353_00060 at 12.509 kb on - strand, within AO353_00060 at 12.555 kb on + strand, within AO353_00060 at 12.580 kb on + strand, within AO353_00060 at 12.580 kb on + strand, within AO353_00060 at 12.580 kb on + strand, within AO353_00060 at 12.580 kb on + strand, within AO353_00060 at 12.581 kb on - strand, within AO353_00060 at 12.581 kb on - strand, within AO353_00060 at 12.581 kb on - strand, within AO353_00060 at 12.649 kb on + strand, within AO353_00060 at 12.650 kb on - strand, within AO353_00060 at 12.697 kb on + strand, within AO353_00060 at 12.697 kb on + strand, within AO353_00060 at 12.697 kb on + strand, within AO353_00060 at 12.697 kb on + strand, within AO353_00060 at 12.697 kb on + strand, within AO353_00060 at 12.698 kb on - strand, within AO353_00060 at 12.698 kb on - strand, within AO353_00060 at 12.698 kb on - strand, within AO353_00060 at 12.698 kb on - strand, within AO353_00060 at 12.808 kb on + strand, within AO353_00060 at 12.808 kb on + strand, within AO353_00060 at 12.808 kb on + strand, within AO353_00060 at 12.808 kb on + strand, within AO353_00060 at 12.808 kb on + strand, within AO353_00060 at 12.809 kb on - strand, within AO353_00060 at 12.809 kb on - strand, within AO353_00060 at 12.809 kb on - strand, within AO353_00060 at 12.809 kb on - strand, within AO353_00060 at 12.814 kb on + strand, within AO353_00060 at 12.814 kb on + strand, within AO353_00060 at 12.870 kb on + strand, within AO353_00060 at 12.870 kb on + strand, within AO353_00060 at 12.870 kb on + strand, within AO353_00060 at 12.947 kb on - strand, within AO353_00060 at 12.979 kb on + strand, within AO353_00060 at 12.979 kb on + strand, within AO353_00060 at 12.979 kb on + strand, within AO353_00060 at 12.980 kb on - strand, within AO353_00060 at 12.980 kb on - strand, within AO353_00060 at 12.980 kb on - strand at 12.980 kb on - strand, within AO353_00060 at 12.980 kb on - strand, within AO353_00060 at 12.980 kb on - strand, within AO353_00060 at 12.980 kb on - strand, within AO353_00060 at 12.980 kb on - strand, within AO353_00060 at 13.079 kb on - strand, within AO353_00060 at 13.105 kb on + strand, within AO353_00060 at 13.105 kb on + strand, within AO353_00060 at 13.106 kb on - strand, within AO353_00060 at 13.223 kb on - strand at 13.223 kb on - strand at 13.269 kb on + strand at 13.306 kb on + strand at 13.312 kb on + strand at 13.312 kb on + strand at 13.313 kb on - strand at 13.313 kb on - strand at 13.313 kb on - strand at 13.315 kb on + strand at 13.316 kb on - strand at 13.316 kb on - strand at 13.316 kb on - strand at 13.927 kb on + strand, within AO353_00065 at 13.982 kb on + strand, within AO353_00065 at 13.982 kb on + strand, within AO353_00065 at 13.982 kb on + strand, within AO353_00065 at 13.983 kb on - strand at 14.063 kb on + strand, within AO353_00065 at 14.063 kb on + strand, within AO353_00065 at 14.063 kb on + strand, within AO353_00065 at 14.064 kb on - strand, within AO353_00065 at 14.064 kb on - strand, within AO353_00065 at 14.199 kb on - strand, within AO353_00065 at 14.266 kb on + strand at 14.266 kb on + strand at 14.266 kb on + strand at 14.267 kb on - strand at 14.267 kb on - strand at 14.267 kb on - strand at 14.267 kb on - strand at 14.267 kb on - strand at 14.307 kb on - strand at 14.307 kb on - strand at 14.552 kb on + strand at 14.552 kb on + strand at 14.552 kb on + strand at 14.552 kb on + strand at 14.552 kb on + strand at 14.552 kb on + strand at 14.552 kb on + strand at 14.552 kb on + strand at 14.552 kb on + strand at 14.552 kb on + strand at 14.552 kb on + strand at 14.553 kb on - strand at 14.553 kb on - strand at 14.553 kb on - strand at 14.553 kb on - strand at 14.553 kb on - strand at 14.553 kb on - strand at 14.553 kb on - strand at 14.553 kb on - strand at 14.553 kb on - strand at 14.583 kb on + strand at 14.594 kb on + strand at 14.595 kb on - strand at 14.625 kb on + strand at 14.625 kb on + strand at 14.625 kb on + strand at 14.625 kb on + strand at 14.625 kb on + strand at 14.626 kb on - strand at 14.626 kb on - strand at 14.626 kb on - strand at 14.654 kb on + strand at 14.654 kb on + strand at 14.655 kb on - strand at 14.747 kb on + strand, within AO353_00070 at 15.062 kb on + strand, within AO353_00070 at 15.062 kb on + strand, within AO353_00070 at 15.062 kb on + strand, within AO353_00070 at 15.062 kb on + strand, within AO353_00070 at 15.062 kb on + strand, within AO353_00070 at 15.062 kb on + strand, within AO353_00070 at 15.063 kb on - strand, within AO353_00070 at 15.063 kb on - strand, within AO353_00070 at 15.063 kb on - strand, within AO353_00070 at 15.063 kb on - strand, within AO353_00070 at 15.063 kb on - strand, within AO353_00070 at 15.065 kb on + strand, within AO353_00070 at 15.065 kb on + strand, within AO353_00070 at 15.065 kb on + strand, within AO353_00070 at 15.065 kb on + strand, within AO353_00070 at 15.066 kb on - strand, within AO353_00070 at 15.066 kb on - strand, within AO353_00070 at 15.154 kb on - strand, within AO353_00070 at 15.185 kb on + strand, within AO353_00070 at 15.185 kb on + strand, within AO353_00070 at 15.185 kb on + strand, within AO353_00070 at 15.185 kb on + strand, within AO353_00070 at 15.185 kb on + strand, within AO353_00070 at 15.186 kb on - strand, within AO353_00070 at 15.186 kb on - strand, within AO353_00070 at 15.186 kb on - strand, within AO353_00070 at 15.186 kb on - strand, within AO353_00070 at 15.186 kb on - strand, within AO353_00070 at 15.186 kb on - strand, within AO353_00070 at 15.186 kb on - strand, within AO353_00070 at 15.186 kb on - strand, within AO353_00070 at 15.186 kb on - strand, within AO353_00070 at 15.189 kb on + strand, within AO353_00070 at 15.189 kb on + strand, within AO353_00070 at 15.189 kb on + strand, within AO353_00070 at 15.190 kb on - strand, within AO353_00070 at 15.190 kb on - strand, within AO353_00070 at 15.190 kb on - strand, within AO353_00070 at 15.190 kb on - strand, within AO353_00070 at 15.190 kb on - strand, within AO353_00070 at 15.190 kb on - strand, within AO353_00070 at 15.190 kb on - strand, within AO353_00070 at 15.321 kb on - strand, within AO353_00070 at 15.321 kb on - strand, within AO353_00070 at 15.321 kb on - strand, within AO353_00070
Per-strain Table
Position Strand Gene LocusTag Fraction L-Serine (N) remove 12,405 + AO353_00060 0.21 -0.6 12,405 + AO353_00060 0.21 +0.3 12,508 + AO353_00060 0.31 -0.6 12,508 + AO353_00060 0.31 +0.4 12,509 - AO353_00060 0.31 +0.9 12,509 - AO353_00060 0.31 +0.5 12,555 + AO353_00060 0.35 -0.7 12,580 + AO353_00060 0.38 -0.4 12,580 + AO353_00060 0.38 -2.2 12,580 + AO353_00060 0.38 +0.2 12,580 + AO353_00060 0.38 +1.4 12,581 - AO353_00060 0.38 +0.2 12,581 - AO353_00060 0.38 +1.2 12,581 - AO353_00060 0.38 +0.8 12,649 + AO353_00060 0.44 -1.2 12,650 - AO353_00060 0.44 -1.8 12,697 + AO353_00060 0.49 -1.4 12,697 + AO353_00060 0.49 -0.2 12,697 + AO353_00060 0.49 -0.4 12,697 + AO353_00060 0.49 +1.0 12,697 + AO353_00060 0.49 -1.3 12,698 - AO353_00060 0.49 +0.6 12,698 - AO353_00060 0.49 -0.1 12,698 - AO353_00060 0.49 +1.0 12,698 - AO353_00060 0.49 +0.7 12,808 + AO353_00060 0.60 +1.0 12,808 + AO353_00060 0.60 -1.0 12,808 + AO353_00060 0.60 +0.3 12,808 + AO353_00060 0.60 -1.9 12,808 + AO353_00060 0.60 -0.5 12,809 - AO353_00060 0.60 +0.4 12,809 - AO353_00060 0.60 -2.0 12,809 - AO353_00060 0.60 +1.2 12,809 - AO353_00060 0.60 +0.2 12,814 + AO353_00060 0.60 -0.4 12,814 + AO353_00060 0.60 -0.1 12,870 + AO353_00060 0.66 +0.2 12,870 + AO353_00060 0.66 -0.2 12,870 + AO353_00060 0.66 +1.2 12,947 - AO353_00060 0.73 +0.2 12,979 + AO353_00060 0.76 -0.2 12,979 + AO353_00060 0.76 -0.9 12,979 + AO353_00060 0.76 -1.4 12,980 - AO353_00060 0.76 +0.3 12,980 - AO353_00060 0.76 +0.9 12,980 - -1.2 12,980 - AO353_00060 0.76 -0.7 12,980 - AO353_00060 0.76 +0.8 12,980 - AO353_00060 0.76 +0.1 12,980 - AO353_00060 0.76 +0.1 12,980 - AO353_00060 0.76 -0.7 13,079 - AO353_00060 0.86 +1.0 13,105 + AO353_00060 0.88 -0.3 13,105 + AO353_00060 0.88 -0.2 13,106 - AO353_00060 0.89 -1.4 13,223 - +1.4 13,223 - -0.4 13,269 + +0.3 13,306 + -0.3 13,312 + -0.0 13,312 + -0.1 13,313 - +1.1 13,313 - +1.2 13,313 - +1.4 13,315 + +0.5 13,316 - +0.3 13,316 - +0.5 13,316 - -2.4 13,927 + AO353_00065 0.55 +0.6 13,982 + AO353_00065 0.61 -1.6 13,982 + AO353_00065 0.61 -0.3 13,982 + AO353_00065 0.61 +0.6 13,983 - +2.2 14,063 + AO353_00065 0.69 +1.2 14,063 + AO353_00065 0.69 +1.2 14,063 + AO353_00065 0.69 +0.3 14,064 - AO353_00065 0.69 +0.0 14,064 - AO353_00065 0.69 +0.7 14,199 - AO353_00065 0.84 +0.4 14,266 + +1.4 14,266 + -0.0 14,266 + +2.0 14,267 - +0.8 14,267 - +0.7 14,267 - -0.3 14,267 - -0.2 14,267 - +0.8 14,307 - +1.1 14,307 - -1.0 14,552 + +0.8 14,552 + +0.9 14,552 + +0.8 14,552 + +0.2 14,552 + -0.1 14,552 + -0.6 14,552 + +0.4 14,552 + -1.0 14,552 + +0.8 14,552 + +0.5 14,552 + -0.2 14,553 - +0.2 14,553 - +0.9 14,553 - +0.6 14,553 - +0.7 14,553 - -2.6 14,553 - +0.4 14,553 - -0.0 14,553 - +0.2 14,553 - +0.1 14,583 + +0.0 14,594 + -1.0 14,595 - -0.9 14,625 + +0.4 14,625 + -1.2 14,625 + -1.0 14,625 + +0.8 14,625 + +0.6 14,626 - -1.7 14,626 - +0.1 14,626 - +0.2 14,654 + -0.5 14,654 + +0.4 14,655 - +0.2 14,747 + AO353_00070 0.12 +1.0 15,062 + AO353_00070 0.52 -1.8 15,062 + AO353_00070 0.52 -0.6 15,062 + AO353_00070 0.52 -1.2 15,062 + AO353_00070 0.52 -0.5 15,062 + AO353_00070 0.52 -0.7 15,062 + AO353_00070 0.52 -0.9 15,063 - AO353_00070 0.52 +0.4 15,063 - AO353_00070 0.52 +0.6 15,063 - AO353_00070 0.52 +0.0 15,063 - AO353_00070 0.52 +1.6 15,063 - AO353_00070 0.52 +1.0 15,065 + AO353_00070 0.52 -0.5 15,065 + AO353_00070 0.52 +0.5 15,065 + AO353_00070 0.52 +0.1 15,065 + AO353_00070 0.52 -0.9 15,066 - AO353_00070 0.52 -0.2 15,066 - AO353_00070 0.52 -0.2 15,154 - AO353_00070 0.63 +1.0 15,185 + AO353_00070 0.67 +1.0 15,185 + AO353_00070 0.67 +0.5 15,185 + AO353_00070 0.67 +0.1 15,185 + AO353_00070 0.67 +0.1 15,185 + AO353_00070 0.67 -0.4 15,186 - AO353_00070 0.68 -0.6 15,186 - AO353_00070 0.68 -0.8 15,186 - AO353_00070 0.68 +1.0 15,186 - AO353_00070 0.68 +1.2 15,186 - AO353_00070 0.68 +0.5 15,186 - AO353_00070 0.68 +0.1 15,186 - AO353_00070 0.68 +0.8 15,186 - AO353_00070 0.68 -1.2 15,186 - AO353_00070 0.68 -1.4 15,189 + AO353_00070 0.68 +0.4 15,189 + AO353_00070 0.68 +0.9 15,189 + AO353_00070 0.68 -0.4 15,190 - AO353_00070 0.68 +0.1 15,190 - AO353_00070 0.68 +0.4 15,190 - AO353_00070 0.68 +0.5 15,190 - AO353_00070 0.68 -0.9 15,190 - AO353_00070 0.68 -0.0 15,190 - AO353_00070 0.68 -0.9 15,190 - AO353_00070 0.68 -0.5 15,321 - AO353_00070 0.85 -0.5 15,321 - AO353_00070 0.85 -0.7 15,321 - AO353_00070 0.85 -0.7
Or see this region's nucleotide sequence