Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00025

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00020 and AO353_00025 are separated by 163 nucleotidesAO353_00025 and AO353_00030 are separated by 47 nucleotides AO353_00020: AO353_00020 - delta-aminolevulinic acid dehydratase, at 3,868 to 4,842 _00020 AO353_00025: AO353_00025 - phenazine biosynthesis protein PhzF, at 5,006 to 5,848 _00025 AO353_00030: AO353_00030 - glutathione S-transferase, at 5,896 to 6,594 _00030 Position (kb) 5 6Strain fitness (log2 ratio) -2 -1 0 1 2at 4.028 kb on + strand, within AO353_00020at 4.028 kb on + strand, within AO353_00020at 4.029 kb on - strand, within AO353_00020at 4.082 kb on + strand, within AO353_00020at 4.082 kb on + strand, within AO353_00020at 4.082 kb on + strand, within AO353_00020at 4.082 kb on + strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.083 kb on - strand, within AO353_00020at 4.188 kb on + strand, within AO353_00020at 4.188 kb on + strand, within AO353_00020at 4.235 kb on + strand, within AO353_00020at 4.235 kb on + strand, within AO353_00020at 4.236 kb on - strand, within AO353_00020at 4.236 kb on - strand, within AO353_00020at 4.262 kb on + strand, within AO353_00020at 4.466 kb on + strand, within AO353_00020at 4.467 kb on - strand, within AO353_00020at 4.467 kb on - strand, within AO353_00020at 4.534 kb on - strand, within AO353_00020at 4.534 kb on - strand, within AO353_00020at 4.634 kb on + strand, within AO353_00020at 4.634 kb on + strand, within AO353_00020at 4.634 kb on + strand, within AO353_00020at 4.635 kb on - strand, within AO353_00020at 4.635 kb on - strand, within AO353_00020at 4.889 kb on + strandat 4.889 kb on + strandat 4.890 kb on - strandat 4.904 kb on + strandat 4.904 kb on + strandat 4.904 kb on + strandat 4.905 kb on - strandat 4.905 kb on - strandat 4.933 kb on + strandat 4.933 kb on + strandat 4.933 kb on + strandat 4.934 kb on - strandat 4.934 kb on - strandat 4.950 kb on + strandat 4.951 kb on - strandat 5.007 kb on + strandat 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.127 kb on + strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.128 kb on - strand, within AO353_00025at 5.223 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.405 kb on - strand, within AO353_00025at 5.859 kb on + strandat 5.859 kb on + strandat 5.869 kb on + strandat 5.962 kb on + strandat 5.962 kb on + strandat 5.962 kb on + strandat 5.963 kb on - strandat 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.005 kb on + strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.006 kb on - strand, within AO353_00030at 6.059 kb on + strand, within AO353_00030at 6.111 kb on + strand, within AO353_00030at 6.111 kb on + strandat 6.112 kb on - strand, within AO353_00030at 6.112 kb on - strand, within AO353_00030at 6.164 kb on + strand, within AO353_00030at 6.164 kb on + strand, within AO353_00030at 6.165 kb on - strand, within AO353_00030at 6.183 kb on + strand, within AO353_00030at 6.184 kb on - strand, within AO353_00030at 6.257 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.308 kb on + strand, within AO353_00030at 6.524 kb on + strand, within AO353_00030at 6.525 kb on - strandat 6.532 kb on + strandat 6.532 kb on + strandat 6.533 kb on - strandat 6.669 kb on - strandat 6.669 kb on - strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.673 kb on + strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.674 kb on - strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.675 kb on + strandat 6.676 kb on - strandat 6.676 kb on - strandat 6.676 kb on - strandat 6.702 kb on - strandat 6.702 kb on - strandat 6.755 kb on + strandat 6.755 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.760 kb on + strandat 6.761 kb on - strandat 6.761 kb on - strandat 6.761 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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4,028 + AO353_00020 0.16 -1.3
4,028 + AO353_00020 0.16 +0.2
4,029 - AO353_00020 0.17 +1.0
4,082 + AO353_00020 0.22 +1.6
4,082 + AO353_00020 0.22 -1.8
4,082 + AO353_00020 0.22 -0.2
4,082 + AO353_00020 0.22 +0.4
4,083 - AO353_00020 0.22 +0.1
4,083 - AO353_00020 0.22 -0.1
4,083 - AO353_00020 0.22 -0.0
4,083 - AO353_00020 0.22 -0.6
4,083 - AO353_00020 0.22 -1.1
4,083 - AO353_00020 0.22 -0.4
4,188 + AO353_00020 0.33 -0.0
4,188 + AO353_00020 0.33 +0.7
4,235 + AO353_00020 0.38 +0.3
4,235 + AO353_00020 0.38 -1.6
4,236 - AO353_00020 0.38 +0.9
4,236 - AO353_00020 0.38 -0.8
4,262 + AO353_00020 0.40 -1.8
4,466 + AO353_00020 0.61 -0.5
4,467 - AO353_00020 0.61 -2.2
4,467 - AO353_00020 0.61 +0.5
4,534 - AO353_00020 0.68 +0.4
4,534 - AO353_00020 0.68 -1.8
4,634 + AO353_00020 0.79 +0.6
4,634 + AO353_00020 0.79 +0.0
4,634 + AO353_00020 0.79 +0.4
4,635 - AO353_00020 0.79 -1.8
4,635 - AO353_00020 0.79 -0.4
4,889 + +0.8
4,889 + +0.4
4,890 - -0.0
4,904 + -0.0
4,904 + +0.7
4,904 + +0.1
4,905 - +0.0
4,905 - -0.6
4,933 + -0.2
4,933 + +1.4
4,933 + +0.1
4,934 - -0.2
4,934 - +1.6
4,950 + +0.8
4,951 - -0.9
5,007 + +0.2
5,127 + AO353_00025 0.14 +0.2
5,127 + AO353_00025 0.14 +0.4
5,127 + AO353_00025 0.14 +0.7
5,127 + AO353_00025 0.14 +0.2
5,128 - AO353_00025 0.14 +0.4
5,128 - AO353_00025 0.14 +0.6
5,128 - AO353_00025 0.14 +0.6
5,128 - AO353_00025 0.14 +0.1
5,223 - AO353_00025 0.26 +1.2
5,405 - AO353_00025 0.47 +0.7
5,405 - AO353_00025 0.47 -0.4
5,405 - AO353_00025 0.47 -0.0
5,859 + -0.3
5,859 + -1.2
5,869 + -0.8
5,962 + -0.2
5,962 + -0.5
5,962 + -1.6
5,963 - +0.2
6,005 + AO353_00030 0.16 -0.0
6,005 + AO353_00030 0.16 -0.2
6,005 + AO353_00030 0.16 +1.9
6,005 + AO353_00030 0.16 -1.0
6,006 - AO353_00030 0.16 -0.3
6,006 - AO353_00030 0.16 -0.5
6,006 - AO353_00030 0.16 -2.7
6,006 - AO353_00030 0.16 -0.7
6,006 - AO353_00030 0.16 -1.2
6,059 + AO353_00030 0.23 -0.0
6,111 + AO353_00030 0.31 -0.2
6,111 + +1.4
6,112 - AO353_00030 0.31 +0.5
6,112 - AO353_00030 0.31 +0.3
6,164 + AO353_00030 0.38 +0.1
6,164 + AO353_00030 0.38 -0.7
6,165 - AO353_00030 0.38 +0.3
6,183 + AO353_00030 0.41 +0.1
6,184 - AO353_00030 0.41 +2.2
6,257 + AO353_00030 0.52 -0.5
6,308 + AO353_00030 0.59 +0.6
6,308 + AO353_00030 0.59 +1.2
6,308 + AO353_00030 0.59 -0.8
6,524 + AO353_00030 0.90 -0.2
6,525 - -0.4
6,532 + +1.1
6,532 + +1.2
6,533 - +0.2
6,669 - +2.6
6,669 - -0.6
6,673 + -0.4
6,673 + +0.7
6,673 + +0.7
6,673 + -1.6
6,673 + +0.1
6,673 + -0.3
6,674 - -0.0
6,674 - -0.4
6,674 - -0.9
6,674 - -0.1
6,675 + -1.2
6,675 + +0.2
6,675 + +2.0
6,675 + -1.8
6,675 + -1.0
6,675 + +0.1
6,675 + -0.9
6,676 - +1.2
6,676 - +0.6
6,676 - +1.8
6,702 - -0.6
6,702 - -0.5
6,755 + +0.0
6,755 + -0.5
6,760 + +2.2
6,760 + -0.7
6,760 + +1.1
6,760 + +1.0
6,760 + +0.4
6,761 - -0.1
6,761 - -0.2
6,761 - +1.4

Or see this region's nucleotide sequence