Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22780

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS22770 and ABZR87_RS22775 are separated by 14 nucleotidesABZR87_RS22775 and ABZR87_RS22780 are separated by 15 nucleotidesABZR87_RS22780 and ABZR87_RS22785 are separated by 25 nucleotides ABZR87_RS22770: ABZR87_RS22770 - urea ABC transporter permease subunit UrtC, at 1,469,855 to 1,470,991 _RS22770 ABZR87_RS22775: ABZR87_RS22775 - urea ABC transporter ATP-binding protein UrtD, at 1,471,006 to 1,471,767 _RS22775 ABZR87_RS22780: ABZR87_RS22780 - urea ABC transporter ATP-binding subunit UrtE, at 1,471,783 to 1,472,472 _RS22780 ABZR87_RS22785: ABZR87_RS22785 - aliphatic amidase, at 1,472,498 to 1,473,520 _RS22785 Position (kb) 1471 1472 1473Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1470.804 kb on - strand, within ABZR87_RS22770at 1470.804 kb on - strand, within ABZR87_RS22770at 1470.804 kb on - strand, within ABZR87_RS22770at 1470.804 kb on - strand, within ABZR87_RS22770at 1470.872 kb on + strand, within ABZR87_RS22770at 1470.872 kb on + strand, within ABZR87_RS22770at 1470.873 kb on - strand, within ABZR87_RS22770at 1470.873 kb on - strand, within ABZR87_RS22770at 1470.873 kb on - strand, within ABZR87_RS22770at 1470.873 kb on - strand, within ABZR87_RS22770at 1470.873 kb on - strand, within ABZR87_RS22770at 1470.900 kb on - strandat 1470.989 kb on + strandat 1470.990 kb on - strandat 1471.108 kb on + strand, within ABZR87_RS22775at 1471.108 kb on + strand, within ABZR87_RS22775at 1471.108 kb on + strand, within ABZR87_RS22775at 1471.108 kb on + strand, within ABZR87_RS22775at 1471.108 kb on + strand, within ABZR87_RS22775at 1471.109 kb on - strand, within ABZR87_RS22775at 1471.109 kb on - strand, within ABZR87_RS22775at 1471.303 kb on + strand, within ABZR87_RS22775at 1471.304 kb on - strand, within ABZR87_RS22775at 1471.753 kb on + strandat 1471.753 kb on + strandat 1471.753 kb on + strandat 1471.754 kb on - strandat 1472.020 kb on + strand, within ABZR87_RS22780at 1472.020 kb on + strand, within ABZR87_RS22780at 1472.020 kb on + strand, within ABZR87_RS22780at 1472.122 kb on + strand, within ABZR87_RS22780at 1472.122 kb on + strand, within ABZR87_RS22780at 1472.122 kb on + strand, within ABZR87_RS22780at 1472.122 kb on + strand, within ABZR87_RS22780at 1472.122 kb on + strand, within ABZR87_RS22780at 1472.123 kb on - strand, within ABZR87_RS22780at 1472.123 kb on - strand, within ABZR87_RS22780at 1472.143 kb on + strand, within ABZR87_RS22780at 1472.143 kb on + strand, within ABZR87_RS22780at 1472.144 kb on - strand, within ABZR87_RS22780at 1472.458 kb on + strandat 1472.458 kb on + strandat 1472.487 kb on + strandat 1472.487 kb on + strandat 1472.487 kb on + strandat 1472.487 kb on + strandat 1472.487 kb on + strandat 1472.487 kb on + strandat 1472.696 kb on + strand, within ABZR87_RS22785at 1472.697 kb on - strand, within ABZR87_RS22785at 1472.697 kb on - strand, within ABZR87_RS22785at 1472.697 kb on - strand, within ABZR87_RS22785at 1472.714 kb on + strand, within ABZR87_RS22785at 1472.715 kb on - strand, within ABZR87_RS22785at 1472.843 kb on + strand, within ABZR87_RS22785at 1472.843 kb on + strand, within ABZR87_RS22785at 1472.843 kb on + strand, within ABZR87_RS22785at 1472.843 kb on + strand, within ABZR87_RS22785at 1472.844 kb on - strand, within ABZR87_RS22785at 1472.844 kb on - strand, within ABZR87_RS22785at 1472.844 kb on - strand, within ABZR87_RS22785at 1472.891 kb on + strand, within ABZR87_RS22785at 1472.892 kb on - strand, within ABZR87_RS22785at 1472.948 kb on + strand, within ABZR87_RS22785at 1472.948 kb on + strand, within ABZR87_RS22785at 1472.948 kb on + strand, within ABZR87_RS22785at 1472.948 kb on + strand, within ABZR87_RS22785at 1472.948 kb on + strand, within ABZR87_RS22785at 1472.949 kb on - strand, within ABZR87_RS22785at 1472.949 kb on - strand, within ABZR87_RS22785at 1472.949 kb on - strand, within ABZR87_RS22785at 1473.009 kb on - strand, within ABZR87_RS22785at 1473.009 kb on - strand, within ABZR87_RS22785at 1473.009 kb on - strand, within ABZR87_RS22785at 1473.071 kb on + strand, within ABZR87_RS22785at 1473.071 kb on + strand, within ABZR87_RS22785at 1473.071 kb on + strand, within ABZR87_RS22785at 1473.071 kb on + strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.072 kb on - strand, within ABZR87_RS22785at 1473.077 kb on + strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.078 kb on - strand, within ABZR87_RS22785at 1473.137 kb on + strand, within ABZR87_RS22785at 1473.138 kb on - strand, within ABZR87_RS22785at 1473.138 kb on - strand, within ABZR87_RS22785at 1473.138 kb on - strand, within ABZR87_RS22785at 1473.177 kb on - strand, within ABZR87_RS22785at 1473.177 kb on - strand, within ABZR87_RS22785at 1473.326 kb on + strand, within ABZR87_RS22785at 1473.326 kb on + strand, within ABZR87_RS22785at 1473.326 kb on + strand, within ABZR87_RS22785at 1473.326 kb on + strand, within ABZR87_RS22785at 1473.326 kb on + strand, within ABZR87_RS22785at 1473.327 kb on - strand, within ABZR87_RS22785at 1473.327 kb on - strand, within ABZR87_RS22785at 1473.327 kb on - strand, within ABZR87_RS22785at 1473.327 kb on - strand, within ABZR87_RS22785at 1473.327 kb on - strand, within ABZR87_RS22785at 1473.328 kb on + strand, within ABZR87_RS22785at 1473.328 kb on + strand, within ABZR87_RS22785at 1473.329 kb on - strand, within ABZR87_RS22785at 1473.329 kb on - strand, within ABZR87_RS22785at 1473.329 kb on - strand, within ABZR87_RS22785at 1473.329 kb on - strand, within ABZR87_RS22785at 1473.410 kb on + strand, within ABZR87_RS22785at 1473.411 kb on - strand, within ABZR87_RS22785at 1473.411 kb on - strand, within ABZR87_RS22785

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,470,804 - ABZR87_RS22770 0.83 -3.2
1,470,804 - ABZR87_RS22770 0.83 -0.3
1,470,804 - ABZR87_RS22770 0.83 -0.3
1,470,804 - ABZR87_RS22770 0.83 -0.3
1,470,872 + ABZR87_RS22770 0.89 -0.5
1,470,872 + ABZR87_RS22770 0.89 +3.1
1,470,873 - ABZR87_RS22770 0.90 -0.8
1,470,873 - ABZR87_RS22770 0.90 +0.3
1,470,873 - ABZR87_RS22770 0.90 +0.0
1,470,873 - ABZR87_RS22770 0.90 -0.4
1,470,873 - ABZR87_RS22770 0.90 +0.1
1,470,900 - +0.3
1,470,989 + -0.2
1,470,990 - -1.1
1,471,108 + ABZR87_RS22775 0.13 -0.7
1,471,108 + ABZR87_RS22775 0.13 +0.1
1,471,108 + ABZR87_RS22775 0.13 -1.5
1,471,108 + ABZR87_RS22775 0.13 +1.8
1,471,108 + ABZR87_RS22775 0.13 +1.7
1,471,109 - ABZR87_RS22775 0.14 +0.7
1,471,109 - ABZR87_RS22775 0.14 +0.1
1,471,303 + ABZR87_RS22775 0.39 +0.2
1,471,304 - ABZR87_RS22775 0.39 -2.4
1,471,753 + -0.0
1,471,753 + -1.6
1,471,753 + +2.8
1,471,754 - -0.4
1,472,020 + ABZR87_RS22780 0.34 +0.1
1,472,020 + ABZR87_RS22780 0.34 +0.3
1,472,020 + ABZR87_RS22780 0.34 +2.1
1,472,122 + ABZR87_RS22780 0.49 +0.5
1,472,122 + ABZR87_RS22780 0.49 +0.4
1,472,122 + ABZR87_RS22780 0.49 +0.8
1,472,122 + ABZR87_RS22780 0.49 +1.6
1,472,122 + ABZR87_RS22780 0.49 -1.1
1,472,123 - ABZR87_RS22780 0.49 -0.3
1,472,123 - ABZR87_RS22780 0.49 -0.0
1,472,143 + ABZR87_RS22780 0.52 +0.3
1,472,143 + ABZR87_RS22780 0.52 +1.9
1,472,144 - ABZR87_RS22780 0.52 -1.0
1,472,458 + +0.1
1,472,458 + -0.5
1,472,487 + +0.9
1,472,487 + -1.2
1,472,487 + +1.3
1,472,487 + +0.1
1,472,487 + +0.8
1,472,487 + -0.3
1,472,696 + ABZR87_RS22785 0.19 +1.2
1,472,697 - ABZR87_RS22785 0.19 -2.0
1,472,697 - ABZR87_RS22785 0.19 -1.7
1,472,697 - ABZR87_RS22785 0.19 +0.9
1,472,714 + ABZR87_RS22785 0.21 +1.1
1,472,715 - ABZR87_RS22785 0.21 -1.5
1,472,843 + ABZR87_RS22785 0.34 -0.2
1,472,843 + ABZR87_RS22785 0.34 -1.2
1,472,843 + ABZR87_RS22785 0.34 -0.0
1,472,843 + ABZR87_RS22785 0.34 +0.1
1,472,844 - ABZR87_RS22785 0.34 -1.3
1,472,844 - ABZR87_RS22785 0.34 -0.9
1,472,844 - ABZR87_RS22785 0.34 -0.8
1,472,891 + ABZR87_RS22785 0.38 +0.3
1,472,892 - ABZR87_RS22785 0.39 -0.0
1,472,948 + ABZR87_RS22785 0.44 +0.5
1,472,948 + ABZR87_RS22785 0.44 -0.8
1,472,948 + ABZR87_RS22785 0.44 -0.3
1,472,948 + ABZR87_RS22785 0.44 -0.8
1,472,948 + ABZR87_RS22785 0.44 -0.9
1,472,949 - ABZR87_RS22785 0.44 +0.6
1,472,949 - ABZR87_RS22785 0.44 +0.5
1,472,949 - ABZR87_RS22785 0.44 +0.0
1,473,009 - ABZR87_RS22785 0.50 +0.2
1,473,009 - ABZR87_RS22785 0.50 +0.3
1,473,009 - ABZR87_RS22785 0.50 -0.1
1,473,071 + ABZR87_RS22785 0.56 -2.4
1,473,071 + ABZR87_RS22785 0.56 +1.2
1,473,071 + ABZR87_RS22785 0.56 +0.2
1,473,071 + ABZR87_RS22785 0.56 +0.9
1,473,072 - ABZR87_RS22785 0.56 -1.8
1,473,072 - ABZR87_RS22785 0.56 -0.7
1,473,072 - ABZR87_RS22785 0.56 -2.6
1,473,072 - ABZR87_RS22785 0.56 -2.2
1,473,072 - ABZR87_RS22785 0.56 -1.9
1,473,072 - ABZR87_RS22785 0.56 -0.5
1,473,072 - ABZR87_RS22785 0.56 -0.3
1,473,077 + ABZR87_RS22785 0.57 -0.2
1,473,078 - ABZR87_RS22785 0.57 +0.9
1,473,078 - ABZR87_RS22785 0.57 +2.8
1,473,078 - ABZR87_RS22785 0.57 +0.6
1,473,078 - ABZR87_RS22785 0.57 +1.5
1,473,078 - ABZR87_RS22785 0.57 +0.3
1,473,078 - ABZR87_RS22785 0.57 -1.7
1,473,137 + ABZR87_RS22785 0.62 -1.1
1,473,138 - ABZR87_RS22785 0.63 -0.9
1,473,138 - ABZR87_RS22785 0.63 -0.0
1,473,138 - ABZR87_RS22785 0.63 +2.8
1,473,177 - ABZR87_RS22785 0.66 +0.8
1,473,177 - ABZR87_RS22785 0.66 +1.0
1,473,326 + ABZR87_RS22785 0.81 -0.8
1,473,326 + ABZR87_RS22785 0.81 +0.8
1,473,326 + ABZR87_RS22785 0.81 +0.5
1,473,326 + ABZR87_RS22785 0.81 +0.7
1,473,326 + ABZR87_RS22785 0.81 +0.1
1,473,327 - ABZR87_RS22785 0.81 -0.9
1,473,327 - ABZR87_RS22785 0.81 -1.2
1,473,327 - ABZR87_RS22785 0.81 -0.1
1,473,327 - ABZR87_RS22785 0.81 +1.0
1,473,327 - ABZR87_RS22785 0.81 -0.8
1,473,328 + ABZR87_RS22785 0.81 +0.0
1,473,328 + ABZR87_RS22785 0.81 +1.5
1,473,329 - ABZR87_RS22785 0.81 +2.8
1,473,329 - ABZR87_RS22785 0.81 +0.3
1,473,329 - ABZR87_RS22785 0.81 -1.5
1,473,329 - ABZR87_RS22785 0.81 -0.4
1,473,410 + ABZR87_RS22785 0.89 -0.2
1,473,411 - ABZR87_RS22785 0.89 -0.0
1,473,411 - ABZR87_RS22785 0.89 -0.7

Or see this region's nucleotide sequence