Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20540 and ABZR87_RS20545 are separated by 129 nucleotides ABZR87_RS20545 and ABZR87_RS20550 overlap by 4 nucleotides
ABZR87_RS20540: ABZR87_RS20540 - LysR family transcriptional regulator, at 994,998 to 995,912
_RS20540
ABZR87_RS20545: ABZR87_RS20545 - aldo/keto reductase, at 996,042 to 996,875
_RS20545
ABZR87_RS20550: ABZR87_RS20550 - SLC13 family permease, at 996,872 to 998,029
_RS20550
Position (kb) 996
997 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 995.060 kb on - strand at 995.074 kb on + strand at 995.075 kb on - strand at 995.083 kb on + strand at 995.083 kb on + strand at 995.084 kb on - strand at 995.314 kb on + strand, within ABZR87_RS20540 at 995.314 kb on + strand, within ABZR87_RS20540 at 995.314 kb on + strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.315 kb on - strand, within ABZR87_RS20540 at 995.380 kb on + strand, within ABZR87_RS20540 at 995.380 kb on + strand, within ABZR87_RS20540 at 995.380 kb on + strand, within ABZR87_RS20540 at 995.380 kb on + strand, within ABZR87_RS20540 at 995.704 kb on + strand, within ABZR87_RS20540 at 995.704 kb on + strand, within ABZR87_RS20540 at 995.879 kb on + strand at 995.879 kb on + strand at 995.880 kb on - strand at 995.880 kb on - strand at 995.935 kb on + strand at 995.936 kb on - strand at 995.970 kb on + strand at 995.980 kb on - strand at 996.183 kb on + strand, within ABZR87_RS20545 at 996.183 kb on + strand, within ABZR87_RS20545 at 996.183 kb on + strand, within ABZR87_RS20545 at 996.183 kb on + strand, within ABZR87_RS20545 at 996.184 kb on - strand, within ABZR87_RS20545 at 996.184 kb on - strand, within ABZR87_RS20545 at 996.184 kb on - strand, within ABZR87_RS20545 at 996.337 kb on - strand, within ABZR87_RS20545 at 996.337 kb on - strand, within ABZR87_RS20545 at 996.337 kb on - strand, within ABZR87_RS20545 at 996.337 kb on - strand, within ABZR87_RS20545 at 996.348 kb on + strand, within ABZR87_RS20545 at 996.348 kb on + strand, within ABZR87_RS20545 at 996.348 kb on + strand, within ABZR87_RS20545 at 996.348 kb on + strand, within ABZR87_RS20545 at 996.348 kb on + strand, within ABZR87_RS20545 at 996.349 kb on - strand, within ABZR87_RS20545 at 996.349 kb on - strand, within ABZR87_RS20545 at 996.349 kb on - strand, within ABZR87_RS20545 at 996.349 kb on - strand, within ABZR87_RS20545 at 996.349 kb on - strand, within ABZR87_RS20545 at 996.349 kb on - strand, within ABZR87_RS20545 at 996.349 kb on - strand, within ABZR87_RS20545 at 996.349 kb on - strand, within ABZR87_RS20545 at 996.449 kb on + strand, within ABZR87_RS20545 at 996.449 kb on + strand, within ABZR87_RS20545 at 996.522 kb on + strand, within ABZR87_RS20545 at 996.522 kb on + strand, within ABZR87_RS20545 at 996.522 kb on + strand, within ABZR87_RS20545 at 996.522 kb on + strand, within ABZR87_RS20545 at 996.523 kb on - strand, within ABZR87_RS20545 at 996.550 kb on + strand, within ABZR87_RS20545 at 996.551 kb on - strand, within ABZR87_RS20545 at 996.558 kb on + strand, within ABZR87_RS20545 at 996.559 kb on - strand, within ABZR87_RS20545 at 996.591 kb on + strand, within ABZR87_RS20545 at 996.680 kb on + strand, within ABZR87_RS20545 at 996.680 kb on + strand, within ABZR87_RS20545 at 996.681 kb on - strand, within ABZR87_RS20545 at 996.704 kb on + strand, within ABZR87_RS20545 at 996.704 kb on + strand, within ABZR87_RS20545 at 996.704 kb on + strand, within ABZR87_RS20545 at 996.704 kb on + strand, within ABZR87_RS20545 at 996.704 kb on + strand, within ABZR87_RS20545 at 996.704 kb on + strand, within ABZR87_RS20545 at 996.704 kb on + strand, within ABZR87_RS20545 at 996.704 kb on + strand, within ABZR87_RS20545 at 996.704 kb on + strand, within ABZR87_RS20545 at 996.705 kb on - strand, within ABZR87_RS20545 at 996.705 kb on - strand, within ABZR87_RS20545 at 996.705 kb on - strand, within ABZR87_RS20545 at 996.829 kb on - strand at 996.829 kb on - strand at 996.829 kb on - strand at 996.829 kb on - strand at 996.874 kb on - strand at 996.897 kb on + strand at 996.897 kb on + strand at 996.897 kb on + strand at 996.898 kb on - strand at 996.898 kb on - strand at 996.898 kb on - strand at 996.920 kb on + strand at 996.936 kb on + strand at 996.937 kb on - strand at 997.069 kb on - strand, within ABZR87_RS20550 at 997.069 kb on - strand, within ABZR87_RS20550 at 997.134 kb on + strand, within ABZR87_RS20550 at 997.134 kb on + strand, within ABZR87_RS20550 at 997.134 kb on + strand, within ABZR87_RS20550 at 997.134 kb on + strand, within ABZR87_RS20550 at 997.135 kb on - strand, within ABZR87_RS20550 at 997.135 kb on - strand, within ABZR87_RS20550 at 997.135 kb on - strand, within ABZR87_RS20550 at 997.269 kb on + strand, within ABZR87_RS20550 at 997.269 kb on + strand, within ABZR87_RS20550 at 997.270 kb on - strand, within ABZR87_RS20550 at 997.270 kb on - strand, within ABZR87_RS20550 at 997.270 kb on - strand, within ABZR87_RS20550 at 997.270 kb on - strand, within ABZR87_RS20550 at 997.287 kb on + strand, within ABZR87_RS20550 at 997.287 kb on + strand, within ABZR87_RS20550 at 997.288 kb on - strand, within ABZR87_RS20550 at 997.288 kb on - strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.356 kb on + strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.357 kb on - strand, within ABZR87_RS20550 at 997.610 kb on + strand, within ABZR87_RS20550 at 997.611 kb on - strand, within ABZR87_RS20550
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 995,060 - +0.5 995,074 + +0.5 995,075 - +0.2 995,083 + -0.3 995,083 + +0.1 995,084 - +0.3 995,314 + ABZR87_RS20540 0.35 -0.5 995,314 + ABZR87_RS20540 0.35 -0.4 995,314 + ABZR87_RS20540 0.35 +3.1 995,315 - ABZR87_RS20540 0.35 -0.5 995,315 - ABZR87_RS20540 0.35 +0.7 995,315 - ABZR87_RS20540 0.35 -0.2 995,315 - ABZR87_RS20540 0.35 +0.8 995,315 - ABZR87_RS20540 0.35 +2.0 995,315 - ABZR87_RS20540 0.35 +0.6 995,380 + ABZR87_RS20540 0.42 +0.7 995,380 + ABZR87_RS20540 0.42 +0.2 995,380 + ABZR87_RS20540 0.42 -1.7 995,380 + ABZR87_RS20540 0.42 -0.5 995,704 + ABZR87_RS20540 0.77 -0.3 995,704 + ABZR87_RS20540 0.77 +1.6 995,879 + -1.1 995,879 + +0.0 995,880 - -0.8 995,880 - +1.0 995,935 + -0.5 995,936 - -0.7 995,970 + +1.1 995,980 - +1.5 996,183 + ABZR87_RS20545 0.17 -0.6 996,183 + ABZR87_RS20545 0.17 +6.9 996,183 + ABZR87_RS20545 0.17 -1.0 996,183 + ABZR87_RS20545 0.17 +1.2 996,184 - ABZR87_RS20545 0.17 -0.8 996,184 - ABZR87_RS20545 0.17 +0.5 996,184 - ABZR87_RS20545 0.17 -0.2 996,337 - ABZR87_RS20545 0.35 -1.6 996,337 - ABZR87_RS20545 0.35 +0.4 996,337 - ABZR87_RS20545 0.35 +0.5 996,337 - ABZR87_RS20545 0.35 +0.2 996,348 + ABZR87_RS20545 0.37 -0.6 996,348 + ABZR87_RS20545 0.37 +0.3 996,348 + ABZR87_RS20545 0.37 -2.5 996,348 + ABZR87_RS20545 0.37 +0.4 996,348 + ABZR87_RS20545 0.37 +0.5 996,349 - ABZR87_RS20545 0.37 -0.6 996,349 - ABZR87_RS20545 0.37 -1.1 996,349 - ABZR87_RS20545 0.37 +0.1 996,349 - ABZR87_RS20545 0.37 -0.6 996,349 - ABZR87_RS20545 0.37 +0.8 996,349 - ABZR87_RS20545 0.37 -0.4 996,349 - ABZR87_RS20545 0.37 -0.6 996,349 - ABZR87_RS20545 0.37 -0.3 996,449 + ABZR87_RS20545 0.49 +0.5 996,449 + ABZR87_RS20545 0.49 +1.0 996,522 + ABZR87_RS20545 0.58 -0.3 996,522 + ABZR87_RS20545 0.58 +0.1 996,522 + ABZR87_RS20545 0.58 +1.0 996,522 + ABZR87_RS20545 0.58 -0.3 996,523 - ABZR87_RS20545 0.58 -0.2 996,550 + ABZR87_RS20545 0.61 -1.3 996,551 - ABZR87_RS20545 0.61 -0.3 996,558 + ABZR87_RS20545 0.62 -1.0 996,559 - ABZR87_RS20545 0.62 -0.3 996,591 + ABZR87_RS20545 0.66 -0.9 996,680 + ABZR87_RS20545 0.76 +1.3 996,680 + ABZR87_RS20545 0.76 +1.0 996,681 - ABZR87_RS20545 0.77 +1.3 996,704 + ABZR87_RS20545 0.79 +0.2 996,704 + ABZR87_RS20545 0.79 +0.2 996,704 + ABZR87_RS20545 0.79 +0.5 996,704 + ABZR87_RS20545 0.79 -1.1 996,704 + ABZR87_RS20545 0.79 -1.3 996,704 + ABZR87_RS20545 0.79 -0.5 996,704 + ABZR87_RS20545 0.79 +0.2 996,704 + ABZR87_RS20545 0.79 -1.8 996,704 + ABZR87_RS20545 0.79 -1.2 996,705 - ABZR87_RS20545 0.79 -0.1 996,705 - ABZR87_RS20545 0.79 +0.7 996,705 - ABZR87_RS20545 0.79 +2.8 996,829 - -0.2 996,829 - -0.3 996,829 - -2.2 996,829 - -0.5 996,874 - -0.2 996,897 + -0.6 996,897 + -0.2 996,897 + +0.4 996,898 - -0.7 996,898 - +2.8 996,898 - -2.9 996,920 + +0.9 996,936 + -0.5 996,937 - -1.8 997,069 - ABZR87_RS20550 0.17 +0.2 997,069 - ABZR87_RS20550 0.17 -0.8 997,134 + ABZR87_RS20550 0.23 +0.2 997,134 + ABZR87_RS20550 0.23 +0.4 997,134 + ABZR87_RS20550 0.23 -2.1 997,134 + ABZR87_RS20550 0.23 +0.4 997,135 - ABZR87_RS20550 0.23 +0.3 997,135 - ABZR87_RS20550 0.23 -0.3 997,135 - ABZR87_RS20550 0.23 -0.5 997,269 + ABZR87_RS20550 0.34 +0.2 997,269 + ABZR87_RS20550 0.34 +0.3 997,270 - ABZR87_RS20550 0.34 +0.8 997,270 - ABZR87_RS20550 0.34 +1.8 997,270 - ABZR87_RS20550 0.34 -1.8 997,270 - ABZR87_RS20550 0.34 +0.4 997,287 + ABZR87_RS20550 0.36 -1.3 997,287 + ABZR87_RS20550 0.36 +0.7 997,288 - ABZR87_RS20550 0.36 +0.8 997,288 - ABZR87_RS20550 0.36 -0.2 997,356 + ABZR87_RS20550 0.42 -0.1 997,356 + ABZR87_RS20550 0.42 +0.5 997,356 + ABZR87_RS20550 0.42 +1.8 997,356 + ABZR87_RS20550 0.42 +0.0 997,356 + ABZR87_RS20550 0.42 -0.7 997,356 + ABZR87_RS20550 0.42 -1.1 997,357 - ABZR87_RS20550 0.42 -0.2 997,357 - ABZR87_RS20550 0.42 +0.5 997,357 - ABZR87_RS20550 0.42 -0.1 997,357 - ABZR87_RS20550 0.42 +1.2 997,357 - ABZR87_RS20550 0.42 -0.5 997,357 - ABZR87_RS20550 0.42 -0.6 997,357 - ABZR87_RS20550 0.42 +0.1 997,357 - ABZR87_RS20550 0.42 -2.2 997,357 - ABZR87_RS20550 0.42 -0.2 997,610 + ABZR87_RS20550 0.64 +0.6 997,611 - ABZR87_RS20550 0.64 -0.9
Or see this region's nucleotide sequence