Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20105

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20100 and ABZR87_RS20105 are separated by 194 nucleotidesABZR87_RS20105 and ABZR87_RS20110 are separated by 40 nucleotidesABZR87_RS20110 and ABZR87_RS20115 are separated by 180 nucleotides ABZR87_RS20100: ABZR87_RS20100 - excinuclease ABC subunit UvrA, at 883,424 to 889,273 _RS20100 ABZR87_RS20105: ABZR87_RS20105 - flagellar filament capping protein FliD, at 889,468 to 891,504 _RS20105 ABZR87_RS20110: ABZR87_RS20110 - hypothetical protein, at 891,545 to 891,820 _RS20110 ABZR87_RS20115: ABZR87_RS20115 - hypothetical protein, at 892,001 to 892,738 _RS20115 Position (kb) 889 890 891 892Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 888.488 kb on + strand, within ABZR87_RS20100at 888.488 kb on + strand, within ABZR87_RS20100at 888.488 kb on + strand, within ABZR87_RS20100at 888.488 kb on + strand, within ABZR87_RS20100at 888.488 kb on + strand, within ABZR87_RS20100at 888.489 kb on - strand, within ABZR87_RS20100at 888.555 kb on - strand, within ABZR87_RS20100at 888.965 kb on + strandat 888.965 kb on + strandat 888.965 kb on + strandat 888.965 kb on + strandat 888.965 kb on + strandat 888.965 kb on + strandat 888.966 kb on - strandat 888.966 kb on - strandat 888.966 kb on - strandat 888.966 kb on - strandat 888.966 kb on - strandat 889.495 kb on + strandat 889.495 kb on + strandat 889.495 kb on + strandat 889.495 kb on + strandat 889.495 kb on + strandat 889.495 kb on + strandat 889.495 kb on + strandat 889.495 kb on + strandat 889.495 kb on + strandat 889.495 kb on + strandat 889.495 kb on + strandat 889.496 kb on - strandat 889.496 kb on - strandat 889.496 kb on - strandat 889.496 kb on - strandat 889.496 kb on - strandat 889.496 kb on - strandat 889.496 kb on - strandat 889.496 kb on - strandat 889.496 kb on - strandat 889.554 kb on + strandat 889.554 kb on + strandat 889.555 kb on - strandat 889.555 kb on - strandat 889.555 kb on - strandat 889.555 kb on - strandat 889.555 kb on - strandat 889.783 kb on + strand, within ABZR87_RS20105at 889.783 kb on + strand, within ABZR87_RS20105at 889.784 kb on - strand, within ABZR87_RS20105at 889.784 kb on - strand, within ABZR87_RS20105at 889.784 kb on - strand, within ABZR87_RS20105at 889.784 kb on - strand, within ABZR87_RS20105at 889.784 kb on - strand, within ABZR87_RS20105at 889.784 kb on - strand, within ABZR87_RS20105at 889.784 kb on - strand, within ABZR87_RS20105at 889.784 kb on - strand, within ABZR87_RS20105at 889.820 kb on + strand, within ABZR87_RS20105at 889.933 kb on + strand, within ABZR87_RS20105at 889.933 kb on + strand, within ABZR87_RS20105at 889.933 kb on + strand, within ABZR87_RS20105at 889.934 kb on - strand, within ABZR87_RS20105at 889.934 kb on - strand, within ABZR87_RS20105at 889.934 kb on - strand, within ABZR87_RS20105at 890.277 kb on + strand, within ABZR87_RS20105at 890.277 kb on + strand, within ABZR87_RS20105at 890.277 kb on + strand, within ABZR87_RS20105at 890.278 kb on - strand, within ABZR87_RS20105at 890.294 kb on + strand, within ABZR87_RS20105at 890.294 kb on + strand, within ABZR87_RS20105at 890.294 kb on + strand, within ABZR87_RS20105at 890.294 kb on + strand, within ABZR87_RS20105at 890.295 kb on - strand, within ABZR87_RS20105at 890.295 kb on - strand, within ABZR87_RS20105at 890.295 kb on - strand, within ABZR87_RS20105at 890.295 kb on - strand, within ABZR87_RS20105at 890.295 kb on - strand, within ABZR87_RS20105at 890.295 kb on - strand, within ABZR87_RS20105at 890.295 kb on - strand, within ABZR87_RS20105at 890.295 kb on - strand, within ABZR87_RS20105at 890.398 kb on + strand, within ABZR87_RS20105at 890.398 kb on + strand, within ABZR87_RS20105at 890.399 kb on - strand, within ABZR87_RS20105at 890.399 kb on - strand, within ABZR87_RS20105at 890.399 kb on - strand, within ABZR87_RS20105at 890.399 kb on - strand, within ABZR87_RS20105at 890.737 kb on + strand, within ABZR87_RS20105at 890.737 kb on + strand, within ABZR87_RS20105at 890.737 kb on + strand, within ABZR87_RS20105at 890.737 kb on + strand, within ABZR87_RS20105at 890.738 kb on - strand, within ABZR87_RS20105at 890.799 kb on + strand, within ABZR87_RS20105at 890.799 kb on + strand, within ABZR87_RS20105at 890.885 kb on - strand, within ABZR87_RS20105at 890.885 kb on - strand, within ABZR87_RS20105at 891.014 kb on - strand, within ABZR87_RS20105at 891.014 kb on - strand, within ABZR87_RS20105at 891.014 kb on - strand, within ABZR87_RS20105at 891.101 kb on + strand, within ABZR87_RS20105at 891.101 kb on + strand, within ABZR87_RS20105at 891.101 kb on + strand, within ABZR87_RS20105at 891.101 kb on + strand, within ABZR87_RS20105at 891.101 kb on + strand, within ABZR87_RS20105at 891.245 kb on - strand, within ABZR87_RS20105at 891.394 kb on + strandat 891.394 kb on + strandat 891.394 kb on + strandat 891.394 kb on + strandat 891.397 kb on + strandat 891.397 kb on + strandat 891.397 kb on + strandat 891.398 kb on - strandat 891.398 kb on - strandat 891.444 kb on + strandat 891.445 kb on - strandat 891.445 kb on - strandat 891.454 kb on + strandat 891.454 kb on + strandat 891.454 kb on + strandat 891.454 kb on + strandat 891.455 kb on - strandat 891.476 kb on + strandat 891.476 kb on + strandat 891.476 kb on + strandat 891.503 kb on - strandat 891.547 kb on - strandat 891.795 kb on - strandat 891.807 kb on + strandat 891.910 kb on - strandat 891.939 kb on + strandat 891.996 kb on - strandat 892.002 kb on + strandat 892.002 kb on + strandat 892.002 kb on + strandat 892.003 kb on - strandat 892.006 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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888,488 + ABZR87_RS20100 0.87 -2.5
888,488 + ABZR87_RS20100 0.87 -1.6
888,488 + ABZR87_RS20100 0.87 -0.5
888,488 + ABZR87_RS20100 0.87 -0.6
888,488 + ABZR87_RS20100 0.87 -0.2
888,489 - ABZR87_RS20100 0.87 -0.5
888,555 - ABZR87_RS20100 0.88 +0.3
888,965 + +0.8
888,965 + -1.0
888,965 + +0.9
888,965 + +0.9
888,965 + -0.5
888,965 + +0.1
888,966 - -1.1
888,966 - +1.0
888,966 - +3.5
888,966 - +0.3
888,966 - +0.4
889,495 + -0.2
889,495 + -0.9
889,495 + +1.3
889,495 + -0.1
889,495 + -0.5
889,495 + +0.3
889,495 + -0.1
889,495 + -0.2
889,495 + +0.8
889,495 + -1.3
889,495 + +2.8
889,496 - +0.2
889,496 - -1.4
889,496 - -2.0
889,496 - -1.7
889,496 - -0.5
889,496 - -1.9
889,496 - +2.0
889,496 - -1.4
889,496 - -0.4
889,554 + +0.1
889,554 + -0.9
889,555 - -2.6
889,555 - +0.0
889,555 - +0.5
889,555 - +0.7
889,555 - +0.4
889,783 + ABZR87_RS20105 0.15 -1.1
889,783 + ABZR87_RS20105 0.15 -0.3
889,784 - ABZR87_RS20105 0.16 -0.9
889,784 - ABZR87_RS20105 0.16 +0.1
889,784 - ABZR87_RS20105 0.16 +0.0
889,784 - ABZR87_RS20105 0.16 -0.5
889,784 - ABZR87_RS20105 0.16 -0.6
889,784 - ABZR87_RS20105 0.16 +0.9
889,784 - ABZR87_RS20105 0.16 -0.6
889,784 - ABZR87_RS20105 0.16 -0.7
889,820 + ABZR87_RS20105 0.17 +0.2
889,933 + ABZR87_RS20105 0.23 -0.3
889,933 + ABZR87_RS20105 0.23 -0.1
889,933 + ABZR87_RS20105 0.23 +0.6
889,934 - ABZR87_RS20105 0.23 -1.1
889,934 - ABZR87_RS20105 0.23 -1.1
889,934 - ABZR87_RS20105 0.23 -0.2
890,277 + ABZR87_RS20105 0.40 +4.0
890,277 + ABZR87_RS20105 0.40 +0.5
890,277 + ABZR87_RS20105 0.40 -0.4
890,278 - ABZR87_RS20105 0.40 -1.6
890,294 + ABZR87_RS20105 0.41 +1.8
890,294 + ABZR87_RS20105 0.41 +0.6
890,294 + ABZR87_RS20105 0.41 -0.3
890,294 + ABZR87_RS20105 0.41 -0.7
890,295 - ABZR87_RS20105 0.41 +2.0
890,295 - ABZR87_RS20105 0.41 +0.6
890,295 - ABZR87_RS20105 0.41 -1.9
890,295 - ABZR87_RS20105 0.41 -0.4
890,295 - ABZR87_RS20105 0.41 -1.0
890,295 - ABZR87_RS20105 0.41 +0.6
890,295 - ABZR87_RS20105 0.41 +0.5
890,295 - ABZR87_RS20105 0.41 +0.5
890,398 + ABZR87_RS20105 0.46 -1.1
890,398 + ABZR87_RS20105 0.46 +0.7
890,399 - ABZR87_RS20105 0.46 -1.0
890,399 - ABZR87_RS20105 0.46 +0.9
890,399 - ABZR87_RS20105 0.46 +0.4
890,399 - ABZR87_RS20105 0.46 +0.0
890,737 + ABZR87_RS20105 0.62 +0.4
890,737 + ABZR87_RS20105 0.62 +1.9
890,737 + ABZR87_RS20105 0.62 +2.2
890,737 + ABZR87_RS20105 0.62 +1.5
890,738 - ABZR87_RS20105 0.62 -0.6
890,799 + ABZR87_RS20105 0.65 +0.8
890,799 + ABZR87_RS20105 0.65 -0.4
890,885 - ABZR87_RS20105 0.70 +1.5
890,885 - ABZR87_RS20105 0.70 +1.3
891,014 - ABZR87_RS20105 0.76 -1.3
891,014 - ABZR87_RS20105 0.76 +3.0
891,014 - ABZR87_RS20105 0.76 -1.3
891,101 + ABZR87_RS20105 0.80 -0.4
891,101 + ABZR87_RS20105 0.80 +0.0
891,101 + ABZR87_RS20105 0.80 -0.9
891,101 + ABZR87_RS20105 0.80 +1.3
891,101 + ABZR87_RS20105 0.80 -0.3
891,245 - ABZR87_RS20105 0.87 +0.2
891,394 + +0.0
891,394 + -0.6
891,394 + -1.6
891,394 + +1.0
891,397 + +2.2
891,397 + +0.2
891,397 + -0.6
891,398 - +0.5
891,398 - +3.6
891,444 + -1.0
891,445 - -1.4
891,445 - -0.0
891,454 + -2.6
891,454 + -0.4
891,454 + +0.3
891,454 + +0.1
891,455 - -0.1
891,476 + -0.1
891,476 + -1.0
891,476 + +1.4
891,503 - -0.4
891,547 - -0.9
891,795 - -0.0
891,807 + -0.6
891,910 - -2.1
891,939 + -0.0
891,996 - +0.1
892,002 + -1.1
892,002 + +0.9
892,002 + -2.3
892,003 - +4.1
892,006 + +2.4

Or see this region's nucleotide sequence