Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20090

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20085 and ABZR87_RS20090 are separated by 80 nucleotidesABZR87_RS20090 and ABZR87_RS20095 are separated by 448 nucleotides ABZR87_RS20085: ABZR87_RS20085 - zinc-dependent alcohol dehydrogenase family protein, at 880,291 to 881,301 _RS20085 ABZR87_RS20090: ABZR87_RS20090 - universal stress protein, at 881,382 to 881,837 _RS20090 ABZR87_RS20095: ABZR87_RS20095 - class II glutamine amidotransferase, at 882,286 to 883,179 _RS20095 Position (kb) 881 882Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 880.431 kb on + strand, within ABZR87_RS20085at 880.431 kb on + strand, within ABZR87_RS20085at 880.431 kb on + strand, within ABZR87_RS20085at 880.432 kb on - strand, within ABZR87_RS20085at 880.639 kb on + strand, within ABZR87_RS20085at 880.640 kb on - strand, within ABZR87_RS20085at 880.657 kb on + strand, within ABZR87_RS20085at 880.657 kb on + strand, within ABZR87_RS20085at 880.666 kb on + strand, within ABZR87_RS20085at 880.666 kb on + strand, within ABZR87_RS20085at 880.666 kb on + strand, within ABZR87_RS20085at 880.666 kb on + strand, within ABZR87_RS20085at 880.666 kb on + strand, within ABZR87_RS20085at 880.667 kb on - strand, within ABZR87_RS20085at 880.667 kb on - strand, within ABZR87_RS20085at 880.667 kb on - strand, within ABZR87_RS20085at 880.667 kb on - strand, within ABZR87_RS20085at 880.667 kb on - strand, within ABZR87_RS20085at 880.687 kb on + strand, within ABZR87_RS20085at 880.688 kb on - strand, within ABZR87_RS20085at 880.804 kb on + strand, within ABZR87_RS20085at 880.804 kb on + strand, within ABZR87_RS20085at 880.804 kb on + strand, within ABZR87_RS20085at 880.804 kb on + strand, within ABZR87_RS20085at 880.804 kb on + strand, within ABZR87_RS20085at 880.804 kb on + strand, within ABZR87_RS20085at 880.805 kb on - strand, within ABZR87_RS20085at 880.805 kb on - strand, within ABZR87_RS20085at 880.805 kb on - strand, within ABZR87_RS20085at 880.805 kb on - strand, within ABZR87_RS20085at 880.805 kb on - strand, within ABZR87_RS20085at 880.805 kb on - strand, within ABZR87_RS20085at 881.160 kb on + strand, within ABZR87_RS20085at 881.160 kb on + strand, within ABZR87_RS20085at 881.160 kb on + strand, within ABZR87_RS20085at 881.333 kb on + strandat 881.333 kb on + strandat 881.333 kb on + strandat 881.334 kb on - strandat 881.334 kb on - strandat 881.342 kb on + strandat 881.343 kb on - strandat 881.356 kb on + strandat 881.356 kb on + strandat 881.357 kb on - strandat 881.385 kb on + strandat 881.385 kb on + strandat 881.386 kb on - strandat 881.386 kb on - strandat 881.386 kb on - strandat 881.386 kb on - strandat 881.386 kb on - strandat 881.427 kb on + strandat 881.427 kb on + strandat 881.427 kb on + strandat 881.548 kb on - strand, within ABZR87_RS20090at 881.568 kb on + strand, within ABZR87_RS20090at 881.568 kb on + strand, within ABZR87_RS20090at 881.568 kb on + strand, within ABZR87_RS20090at 881.569 kb on - strand, within ABZR87_RS20090at 881.569 kb on - strand, within ABZR87_RS20090at 881.569 kb on - strand, within ABZR87_RS20090at 881.835 kb on + strandat 881.836 kb on - strandat 882.088 kb on - strandat 882.158 kb on - strandat 882.247 kb on + strandat 882.247 kb on + strandat 882.247 kb on + strandat 882.247 kb on + strandat 882.247 kb on + strandat 882.247 kb on + strandat 882.247 kb on + strandat 882.247 kb on + strandat 882.248 kb on - strandat 882.248 kb on - strandat 882.248 kb on - strandat 882.248 kb on - strandat 882.248 kb on - strandat 882.248 kb on - strandat 882.271 kb on + strandat 882.271 kb on + strandat 882.271 kb on + strandat 882.271 kb on + strandat 882.271 kb on + strandat 882.272 kb on - strandat 882.272 kb on - strandat 882.272 kb on - strandat 882.273 kb on + strandat 882.273 kb on + strandat 882.273 kb on + strandat 882.273 kb on + strandat 882.274 kb on - strandat 882.304 kb on + strandat 882.304 kb on + strandat 882.304 kb on + strandat 882.304 kb on + strandat 882.304 kb on + strandat 882.425 kb on + strand, within ABZR87_RS20095at 882.425 kb on + strand, within ABZR87_RS20095at 882.426 kb on - strand, within ABZR87_RS20095at 882.426 kb on - strand, within ABZR87_RS20095at 882.442 kb on + strand, within ABZR87_RS20095at 882.643 kb on + strand, within ABZR87_RS20095at 882.643 kb on + strand, within ABZR87_RS20095at 882.644 kb on - strand, within ABZR87_RS20095at 882.832 kb on + strand, within ABZR87_RS20095

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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880,431 + ABZR87_RS20085 0.14 -0.2
880,431 + ABZR87_RS20085 0.14 +1.2
880,431 + ABZR87_RS20085 0.14 -0.8
880,432 - ABZR87_RS20085 0.14 +0.9
880,639 + ABZR87_RS20085 0.34 -2.4
880,640 - ABZR87_RS20085 0.35 +0.1
880,657 + ABZR87_RS20085 0.36 -1.7
880,657 + ABZR87_RS20085 0.36 -2.8
880,666 + ABZR87_RS20085 0.37 +0.4
880,666 + ABZR87_RS20085 0.37 +1.3
880,666 + ABZR87_RS20085 0.37 -0.1
880,666 + ABZR87_RS20085 0.37 +0.4
880,666 + ABZR87_RS20085 0.37 +0.3
880,667 - ABZR87_RS20085 0.37 +0.7
880,667 - ABZR87_RS20085 0.37 -0.6
880,667 - ABZR87_RS20085 0.37 +0.1
880,667 - ABZR87_RS20085 0.37 -0.1
880,667 - ABZR87_RS20085 0.37 -1.2
880,687 + ABZR87_RS20085 0.39 +0.1
880,688 - ABZR87_RS20085 0.39 +0.5
880,804 + ABZR87_RS20085 0.51 -0.9
880,804 + ABZR87_RS20085 0.51 -0.0
880,804 + ABZR87_RS20085 0.51 +0.2
880,804 + ABZR87_RS20085 0.51 -0.6
880,804 + ABZR87_RS20085 0.51 -0.5
880,804 + ABZR87_RS20085 0.51 -0.6
880,805 - ABZR87_RS20085 0.51 +0.3
880,805 - ABZR87_RS20085 0.51 -1.9
880,805 - ABZR87_RS20085 0.51 -0.2
880,805 - ABZR87_RS20085 0.51 -0.9
880,805 - ABZR87_RS20085 0.51 +1.0
880,805 - ABZR87_RS20085 0.51 -0.1
881,160 + ABZR87_RS20085 0.86 -1.0
881,160 + ABZR87_RS20085 0.86 -0.3
881,160 + ABZR87_RS20085 0.86 -0.3
881,333 + +0.4
881,333 + -0.1
881,333 + +1.6
881,334 - +1.2
881,334 - -0.2
881,342 + -0.2
881,343 - -2.0
881,356 + +0.1
881,356 + -0.0
881,357 - -0.4
881,385 + +0.2
881,385 + -0.6
881,386 - -0.2
881,386 - -0.4
881,386 - +1.1
881,386 - -0.8
881,386 - -1.2
881,427 + -0.2
881,427 + +0.8
881,427 + +0.6
881,548 - ABZR87_RS20090 0.36 -0.0
881,568 + ABZR87_RS20090 0.41 +0.0
881,568 + ABZR87_RS20090 0.41 -1.6
881,568 + ABZR87_RS20090 0.41 -0.7
881,569 - ABZR87_RS20090 0.41 -0.2
881,569 - ABZR87_RS20090 0.41 -0.9
881,569 - ABZR87_RS20090 0.41 -2.9
881,835 + -0.3
881,836 - +2.0
882,088 - +0.3
882,158 - +0.6
882,247 + -0.4
882,247 + -0.3
882,247 + -0.3
882,247 + +0.8
882,247 + +0.9
882,247 + +1.1
882,247 + -0.7
882,247 + -1.4
882,248 - -2.2
882,248 - +0.5
882,248 - +0.2
882,248 - -0.5
882,248 - +1.9
882,248 - +1.7
882,271 + +0.1
882,271 + -0.1
882,271 + -0.5
882,271 + -0.2
882,271 + +1.8
882,272 - +0.2
882,272 - +2.6
882,272 - -2.6
882,273 + -1.3
882,273 + +1.6
882,273 + -0.0
882,273 + -0.7
882,274 - -0.2
882,304 + +1.4
882,304 + -1.2
882,304 + +0.6
882,304 + +0.7
882,304 + +1.6
882,425 + ABZR87_RS20095 0.16 +0.1
882,425 + ABZR87_RS20095 0.16 -2.1
882,426 - ABZR87_RS20095 0.16 -1.2
882,426 - ABZR87_RS20095 0.16 +1.6
882,442 + ABZR87_RS20095 0.17 +1.2
882,643 + ABZR87_RS20095 0.40 +0.4
882,643 + ABZR87_RS20095 0.40 +0.6
882,644 - ABZR87_RS20095 0.40 +0.0
882,832 + ABZR87_RS20095 0.61 +0.5

Or see this region's nucleotide sequence