Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18630 and ABZR87_RS18635 are separated by 190 nucleotides ABZR87_RS18635 and ABZR87_RS18640 are separated by 29 nucleotides
ABZR87_RS18630: ABZR87_RS18630 - class II fumarate hydratase, at 531,836 to 533,221
_RS18630
ABZR87_RS18635: ABZR87_RS18635 - multidrug transporter subunit MdtD, at 533,412 to 534,842
_RS18635
ABZR87_RS18640: ABZR87_RS18640 - ATP-dependent helicase, at 534,872 to 537,022
_RS18640
Position (kb) 533
534
535 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 532.614 kb on + strand, within ABZR87_RS18630 at 533.263 kb on + strand at 533.263 kb on + strand at 533.265 kb on + strand at 533.265 kb on + strand at 533.266 kb on - strand at 533.295 kb on - strand at 533.587 kb on - strand, within ABZR87_RS18635 at 534.310 kb on - strand, within ABZR87_RS18635 at 534.310 kb on - strand, within ABZR87_RS18635 at 534.400 kb on - strand, within ABZR87_RS18635 at 534.403 kb on + strand, within ABZR87_RS18635 at 534.403 kb on + strand, within ABZR87_RS18635 at 534.554 kb on + strand, within ABZR87_RS18635 at 534.554 kb on + strand, within ABZR87_RS18635 at 534.555 kb on - strand, within ABZR87_RS18635 at 535.029 kb on + strand at 535.030 kb on - strand at 535.030 kb on - strand at 535.030 kb on - strand at 535.030 kb on - strand at 535.030 kb on - strand at 535.068 kb on + strand at 535.069 kb on - strand at 535.069 kb on - strand at 535.126 kb on - strand, within ABZR87_RS18640 at 535.126 kb on - strand, within ABZR87_RS18640 at 535.212 kb on + strand, within ABZR87_RS18640 at 535.212 kb on + strand, within ABZR87_RS18640 at 535.212 kb on + strand, within ABZR87_RS18640 at 535.212 kb on + strand, within ABZR87_RS18640 at 535.212 kb on + strand, within ABZR87_RS18640 at 535.213 kb on - strand, within ABZR87_RS18640 at 535.213 kb on - strand, within ABZR87_RS18640 at 535.213 kb on - strand, within ABZR87_RS18640 at 535.213 kb on - strand, within ABZR87_RS18640 at 535.213 kb on - strand, within ABZR87_RS18640 at 535.359 kb on + strand, within ABZR87_RS18640 at 535.443 kb on + strand, within ABZR87_RS18640 at 535.444 kb on - strand, within ABZR87_RS18640 at 535.499 kb on - strand, within ABZR87_RS18640 at 535.499 kb on - strand, within ABZR87_RS18640 at 535.563 kb on + strand, within ABZR87_RS18640 at 535.563 kb on + strand, within ABZR87_RS18640 at 535.564 kb on - strand, within ABZR87_RS18640 at 535.712 kb on + strand, within ABZR87_RS18640 at 535.712 kb on + strand, within ABZR87_RS18640 at 535.713 kb on - strand, within ABZR87_RS18640 at 535.758 kb on + strand, within ABZR87_RS18640 at 535.759 kb on - strand, within ABZR87_RS18640 at 535.759 kb on - strand, within ABZR87_RS18640 at 535.759 kb on - strand, within ABZR87_RS18640
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 532,614 + ABZR87_RS18630 0.56 +0.8 533,263 + +0.0 533,263 + +0.9 533,265 + -0.9 533,265 + -0.1 533,266 - -0.2 533,295 - -1.8 533,587 - ABZR87_RS18635 0.12 -0.9 534,310 - ABZR87_RS18635 0.63 -2.3 534,310 - ABZR87_RS18635 0.63 +0.5 534,400 - ABZR87_RS18635 0.69 +0.7 534,403 + ABZR87_RS18635 0.69 -1.0 534,403 + ABZR87_RS18635 0.69 -2.4 534,554 + ABZR87_RS18635 0.80 -0.0 534,554 + ABZR87_RS18635 0.80 -0.6 534,555 - ABZR87_RS18635 0.80 +0.0 535,029 + +1.3 535,030 - +0.8 535,030 - +0.6 535,030 - -0.1 535,030 - +0.8 535,030 - -1.3 535,068 + -0.2 535,069 - -1.3 535,069 - +0.2 535,126 - ABZR87_RS18640 0.12 -2.9 535,126 - ABZR87_RS18640 0.12 +1.0 535,212 + ABZR87_RS18640 0.16 -0.6 535,212 + ABZR87_RS18640 0.16 +0.4 535,212 + ABZR87_RS18640 0.16 +1.2 535,212 + ABZR87_RS18640 0.16 +0.2 535,212 + ABZR87_RS18640 0.16 +0.5 535,213 - ABZR87_RS18640 0.16 -0.0 535,213 - ABZR87_RS18640 0.16 -2.3 535,213 - ABZR87_RS18640 0.16 +1.7 535,213 - ABZR87_RS18640 0.16 -0.9 535,213 - ABZR87_RS18640 0.16 -0.4 535,359 + ABZR87_RS18640 0.23 -0.0 535,443 + ABZR87_RS18640 0.27 +0.2 535,444 - ABZR87_RS18640 0.27 -1.5 535,499 - ABZR87_RS18640 0.29 -1.2 535,499 - ABZR87_RS18640 0.29 -2.0 535,563 + ABZR87_RS18640 0.32 +2.1 535,563 + ABZR87_RS18640 0.32 +0.2 535,564 - ABZR87_RS18640 0.32 -0.3 535,712 + ABZR87_RS18640 0.39 +1.1 535,712 + ABZR87_RS18640 0.39 +1.6 535,713 - ABZR87_RS18640 0.39 +1.9 535,758 + ABZR87_RS18640 0.41 +0.9 535,759 - ABZR87_RS18640 0.41 -0.4 535,759 - ABZR87_RS18640 0.41 -2.3 535,759 - ABZR87_RS18640 0.41 +0.2
Or see this region's nucleotide sequence