Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17715

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17705 and ABZR87_RS17710 are separated by 29 nucleotidesABZR87_RS17710 and ABZR87_RS17715 are separated by 35 nucleotidesABZR87_RS17715 and ABZR87_RS17720 are separated by 317 nucleotides ABZR87_RS17705: ABZR87_RS17705 - DUF3455 domain-containing protein, at 336,006 to 336,536 _RS17705 ABZR87_RS17710: ABZR87_RS17710 - DUF488 family protein, at 336,566 to 336,964 _RS17710 ABZR87_RS17715: ABZR87_RS17715 - ABC transporter substrate-binding protein, at 337,000 to 338,028 _RS17715 ABZR87_RS17720: ABZR87_RS17720 - ABC transporter permease, at 338,346 to 339,242 _RS17720 Position (kb) 336 337 338 339Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 336.072 kb on + strand, within ABZR87_RS17705at 336.172 kb on - strand, within ABZR87_RS17705at 336.302 kb on - strand, within ABZR87_RS17705at 336.302 kb on - strand, within ABZR87_RS17705at 336.302 kb on - strand, within ABZR87_RS17705at 336.345 kb on - strand, within ABZR87_RS17705at 336.345 kb on - strand, within ABZR87_RS17705at 336.367 kb on + strand, within ABZR87_RS17705at 336.367 kb on + strand, within ABZR87_RS17705at 336.367 kb on + strand, within ABZR87_RS17705at 336.367 kb on + strand, within ABZR87_RS17705at 336.367 kb on + strand, within ABZR87_RS17705at 336.367 kb on + strand, within ABZR87_RS17705at 336.367 kb on + strand, within ABZR87_RS17705at 336.368 kb on - strand, within ABZR87_RS17705at 336.368 kb on - strand, within ABZR87_RS17705at 336.645 kb on + strand, within ABZR87_RS17710at 336.646 kb on - strand, within ABZR87_RS17710at 336.646 kb on - strand, within ABZR87_RS17710at 336.646 kb on - strand, within ABZR87_RS17710at 336.844 kb on - strand, within ABZR87_RS17710at 336.844 kb on - strand, within ABZR87_RS17710at 336.956 kb on + strandat 336.956 kb on + strandat 336.957 kb on - strandat 337.002 kb on - strandat 337.002 kb on - strandat 337.002 kb on - strandat 337.002 kb on - strandat 337.097 kb on + strandat 337.097 kb on + strandat 337.097 kb on + strandat 337.098 kb on - strandat 337.199 kb on + strand, within ABZR87_RS17715at 337.200 kb on - strand, within ABZR87_RS17715at 337.296 kb on - strand, within ABZR87_RS17715at 337.296 kb on - strand, within ABZR87_RS17715at 337.296 kb on - strand, within ABZR87_RS17715at 337.296 kb on - strand, within ABZR87_RS17715at 337.313 kb on + strand, within ABZR87_RS17715at 337.313 kb on + strand, within ABZR87_RS17715at 337.314 kb on - strand, within ABZR87_RS17715at 337.314 kb on - strand, within ABZR87_RS17715at 337.314 kb on - strand, within ABZR87_RS17715at 337.394 kb on + strand, within ABZR87_RS17715at 337.395 kb on - strand, within ABZR87_RS17715at 337.808 kb on + strand, within ABZR87_RS17715at 337.819 kb on + strand, within ABZR87_RS17715at 337.820 kb on - strand, within ABZR87_RS17715at 337.892 kb on + strand, within ABZR87_RS17715at 337.893 kb on - strand, within ABZR87_RS17715at 337.905 kb on - strand, within ABZR87_RS17715at 338.053 kb on + strandat 338.054 kb on - strandat 338.054 kb on - strandat 338.054 kb on - strandat 338.107 kb on + strandat 338.107 kb on + strandat 338.108 kb on - strandat 338.133 kb on + strandat 338.272 kb on - strandat 338.272 kb on - strandat 338.308 kb on + strandat 338.308 kb on + strandat 338.309 kb on - strandat 338.347 kb on + strandat 338.348 kb on - strandat 338.348 kb on - strandat 338.348 kb on - strandat 338.397 kb on + strandat 338.400 kb on + strandat 338.400 kb on + strandat 338.401 kb on - strandat 338.401 kb on - strandat 338.485 kb on + strand, within ABZR87_RS17720at 338.485 kb on + strand, within ABZR87_RS17720at 338.491 kb on + strand, within ABZR87_RS17720at 338.491 kb on + strand, within ABZR87_RS17720at 338.491 kb on + strand, within ABZR87_RS17720at 338.491 kb on + strand, within ABZR87_RS17720at 338.492 kb on - strand, within ABZR87_RS17720at 338.633 kb on - strand, within ABZR87_RS17720at 338.633 kb on - strand, within ABZR87_RS17720at 338.633 kb on - strand, within ABZR87_RS17720at 338.654 kb on - strand, within ABZR87_RS17720at 338.917 kb on + strand, within ABZR87_RS17720

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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336,072 + ABZR87_RS17705 0.12 +1.2
336,172 - ABZR87_RS17705 0.31 -1.0
336,302 - ABZR87_RS17705 0.56 -0.2
336,302 - ABZR87_RS17705 0.56 +0.6
336,302 - ABZR87_RS17705 0.56 +0.4
336,345 - ABZR87_RS17705 0.64 -0.6
336,345 - ABZR87_RS17705 0.64 -0.2
336,367 + ABZR87_RS17705 0.68 -0.2
336,367 + ABZR87_RS17705 0.68 +0.8
336,367 + ABZR87_RS17705 0.68 +0.2
336,367 + ABZR87_RS17705 0.68 -1.5
336,367 + ABZR87_RS17705 0.68 -0.8
336,367 + ABZR87_RS17705 0.68 -1.9
336,367 + ABZR87_RS17705 0.68 -0.0
336,368 - ABZR87_RS17705 0.68 -1.2
336,368 - ABZR87_RS17705 0.68 -0.4
336,645 + ABZR87_RS17710 0.20 -0.2
336,646 - ABZR87_RS17710 0.20 +0.3
336,646 - ABZR87_RS17710 0.20 -0.5
336,646 - ABZR87_RS17710 0.20 +1.1
336,844 - ABZR87_RS17710 0.70 -0.1
336,844 - ABZR87_RS17710 0.70 +0.3
336,956 + -0.7
336,956 + -0.2
336,957 - +0.6
337,002 - -0.3
337,002 - -1.2
337,002 - +1.3
337,002 - -0.9
337,097 + +0.7
337,097 + -0.2
337,097 + +0.2
337,098 - -0.6
337,199 + ABZR87_RS17715 0.19 +0.8
337,200 - ABZR87_RS17715 0.19 +1.0
337,296 - ABZR87_RS17715 0.29 -1.2
337,296 - ABZR87_RS17715 0.29 -0.3
337,296 - ABZR87_RS17715 0.29 +1.0
337,296 - ABZR87_RS17715 0.29 -0.1
337,313 + ABZR87_RS17715 0.30 +0.5
337,313 + ABZR87_RS17715 0.30 +1.6
337,314 - ABZR87_RS17715 0.31 +0.2
337,314 - ABZR87_RS17715 0.31 +0.3
337,314 - ABZR87_RS17715 0.31 -0.0
337,394 + ABZR87_RS17715 0.38 -0.1
337,395 - ABZR87_RS17715 0.38 -1.4
337,808 + ABZR87_RS17715 0.79 -1.1
337,819 + ABZR87_RS17715 0.80 +1.0
337,820 - ABZR87_RS17715 0.80 -1.8
337,892 + ABZR87_RS17715 0.87 +2.0
337,893 - ABZR87_RS17715 0.87 +5.4
337,905 - ABZR87_RS17715 0.88 -0.4
338,053 + +1.8
338,054 - -0.5
338,054 - +0.2
338,054 - +0.0
338,107 + +0.2
338,107 + +0.2
338,108 - +2.8
338,133 + +0.2
338,272 - -1.5
338,272 - +0.4
338,308 + -0.2
338,308 + -0.3
338,309 - -1.8
338,347 + -1.6
338,348 - -0.9
338,348 - +2.8
338,348 - +1.0
338,397 + +0.2
338,400 + +0.2
338,400 + +0.9
338,401 - +0.2
338,401 - +0.2
338,485 + ABZR87_RS17720 0.15 -0.3
338,485 + ABZR87_RS17720 0.15 -0.9
338,491 + ABZR87_RS17720 0.16 -1.0
338,491 + ABZR87_RS17720 0.16 +1.5
338,491 + ABZR87_RS17720 0.16 -2.8
338,491 + ABZR87_RS17720 0.16 -0.2
338,492 - ABZR87_RS17720 0.16 +1.1
338,633 - ABZR87_RS17720 0.32 +0.5
338,633 - ABZR87_RS17720 0.32 -0.8
338,633 - ABZR87_RS17720 0.32 +1.0
338,654 - ABZR87_RS17720 0.34 +0.2
338,917 + ABZR87_RS17720 0.64 +2.5

Or see this region's nucleotide sequence