Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17180 and ABZR87_RS17185 are separated by 118 nucleotides ABZR87_RS17185 and ABZR87_RS17190 are separated by 55 nucleotides
ABZR87_RS17180: ABZR87_RS17180 - class I SAM-dependent methyltransferase, at 200,000 to 200,752
_RS17180
ABZR87_RS17185: ABZR87_RS17185 - amidohydrolase, at 200,871 to 201,791
_RS17185
ABZR87_RS17190: ABZR87_RS17190 - MFS transporter, at 201,847 to 203,094
_RS17190
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.926 kb on + strand at 199.927 kb on - strand at 199.927 kb on - strand at 199.968 kb on + strand at 200.061 kb on + strand at 200.061 kb on + strand at 200.062 kb on - strand at 200.238 kb on + strand, within ABZR87_RS17180 at 200.246 kb on + strand, within ABZR87_RS17180 at 200.246 kb on + strand, within ABZR87_RS17180 at 200.246 kb on + strand, within ABZR87_RS17180 at 200.247 kb on - strand, within ABZR87_RS17180 at 200.303 kb on + strand, within ABZR87_RS17180 at 200.303 kb on + strand, within ABZR87_RS17180 at 200.304 kb on - strand, within ABZR87_RS17180 at 200.391 kb on + strand, within ABZR87_RS17180 at 200.547 kb on + strand, within ABZR87_RS17180 at 200.548 kb on - strand, within ABZR87_RS17180 at 200.701 kb on - strand at 200.764 kb on - strand at 200.764 kb on - strand at 200.793 kb on + strand at 200.793 kb on + strand at 200.793 kb on + strand at 200.794 kb on - strand at 200.794 kb on - strand at 200.794 kb on - strand at 200.861 kb on + strand at 200.861 kb on + strand at 200.861 kb on + strand at 200.861 kb on + strand at 200.861 kb on + strand at 200.861 kb on + strand at 200.862 kb on - strand at 200.862 kb on - strand at 200.862 kb on - strand at 200.862 kb on - strand at 200.971 kb on + strand, within ABZR87_RS17185 at 200.971 kb on + strand, within ABZR87_RS17185 at 201.499 kb on + strand, within ABZR87_RS17185 at 201.500 kb on - strand, within ABZR87_RS17185 at 201.500 kb on - strand, within ABZR87_RS17185 at 201.500 kb on - strand, within ABZR87_RS17185 at 201.598 kb on + strand, within ABZR87_RS17185 at 201.598 kb on + strand, within ABZR87_RS17185 at 201.598 kb on + strand, within ABZR87_RS17185 at 201.598 kb on + strand, within ABZR87_RS17185 at 201.599 kb on - strand, within ABZR87_RS17185 at 201.599 kb on - strand, within ABZR87_RS17185 at 201.599 kb on - strand, within ABZR87_RS17185 at 201.599 kb on - strand, within ABZR87_RS17185 at 201.599 kb on - strand, within ABZR87_RS17185 at 201.648 kb on + strand, within ABZR87_RS17185 at 201.648 kb on + strand, within ABZR87_RS17185 at 201.649 kb on - strand, within ABZR87_RS17185 at 201.747 kb on + strand at 201.747 kb on + strand at 201.747 kb on + strand at 201.747 kb on + strand at 201.747 kb on + strand at 201.748 kb on - strand at 201.748 kb on - strand at 201.748 kb on - strand at 201.748 kb on - strand at 201.748 kb on - strand at 201.748 kb on - strand at 201.920 kb on + strand at 202.026 kb on - strand, within ABZR87_RS17190 at 202.172 kb on + strand, within ABZR87_RS17190 at 202.172 kb on + strand, within ABZR87_RS17190 at 202.172 kb on + strand, within ABZR87_RS17190 at 202.172 kb on + strand, within ABZR87_RS17190 at 202.172 kb on + strand, within ABZR87_RS17190 at 202.173 kb on - strand, within ABZR87_RS17190 at 202.173 kb on - strand, within ABZR87_RS17190 at 202.173 kb on - strand, within ABZR87_RS17190 at 202.173 kb on - strand, within ABZR87_RS17190 at 202.181 kb on - strand, within ABZR87_RS17190 at 202.343 kb on + strand, within ABZR87_RS17190 at 202.344 kb on - strand, within ABZR87_RS17190 at 202.370 kb on + strand, within ABZR87_RS17190 at 202.370 kb on + strand, within ABZR87_RS17190 at 202.370 kb on + strand, within ABZR87_RS17190 at 202.371 kb on - strand, within ABZR87_RS17190 at 202.374 kb on - strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.535 kb on + strand, within ABZR87_RS17190 at 202.536 kb on - strand, within ABZR87_RS17190 at 202.536 kb on - strand, within ABZR87_RS17190 at 202.536 kb on - strand, within ABZR87_RS17190 at 202.610 kb on + strand, within ABZR87_RS17190 at 202.610 kb on + strand, within ABZR87_RS17190 at 202.611 kb on - strand, within ABZR87_RS17190 at 202.622 kb on + strand, within ABZR87_RS17190 at 202.622 kb on + strand, within ABZR87_RS17190 at 202.623 kb on - strand, within ABZR87_RS17190
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 199,926 + +0.2 199,927 - -0.2 199,927 - +0.4 199,968 + +1.7 200,061 + +0.3 200,061 + +0.2 200,062 - +1.7 200,238 + ABZR87_RS17180 0.32 -0.4 200,246 + ABZR87_RS17180 0.33 +2.2 200,246 + ABZR87_RS17180 0.33 +0.0 200,246 + ABZR87_RS17180 0.33 +0.6 200,247 - ABZR87_RS17180 0.33 -1.6 200,303 + ABZR87_RS17180 0.40 -2.6 200,303 + ABZR87_RS17180 0.40 +0.2 200,304 - ABZR87_RS17180 0.40 +1.7 200,391 + ABZR87_RS17180 0.52 +2.5 200,547 + ABZR87_RS17180 0.73 +0.5 200,548 - ABZR87_RS17180 0.73 -1.7 200,701 - -2.2 200,764 - +0.3 200,764 - +0.8 200,793 + -0.2 200,793 + +0.1 200,793 + +1.0 200,794 - -0.7 200,794 - +0.2 200,794 - -1.4 200,861 + +0.0 200,861 + -0.3 200,861 + +0.3 200,861 + -0.2 200,861 + -1.3 200,861 + -1.5 200,862 - +0.4 200,862 - -2.8 200,862 - -0.2 200,862 - -0.6 200,971 + ABZR87_RS17185 0.11 -1.1 200,971 + ABZR87_RS17185 0.11 -1.3 201,499 + ABZR87_RS17185 0.68 -1.0 201,500 - ABZR87_RS17185 0.68 -0.7 201,500 - ABZR87_RS17185 0.68 -2.6 201,500 - ABZR87_RS17185 0.68 -0.3 201,598 + ABZR87_RS17185 0.79 +0.0 201,598 + ABZR87_RS17185 0.79 +1.1 201,598 + ABZR87_RS17185 0.79 +0.4 201,598 + ABZR87_RS17185 0.79 -1.6 201,599 - ABZR87_RS17185 0.79 +0.8 201,599 - ABZR87_RS17185 0.79 +0.2 201,599 - ABZR87_RS17185 0.79 -2.2 201,599 - ABZR87_RS17185 0.79 -0.6 201,599 - ABZR87_RS17185 0.79 -1.5 201,648 + ABZR87_RS17185 0.84 -1.7 201,648 + ABZR87_RS17185 0.84 -0.9 201,649 - ABZR87_RS17185 0.84 -0.9 201,747 + -1.3 201,747 + -0.7 201,747 + -0.2 201,747 + +0.2 201,747 + -0.3 201,748 - -1.5 201,748 - +0.1 201,748 - -0.6 201,748 - -1.1 201,748 - -0.7 201,748 - +0.2 201,920 + -0.4 202,026 - ABZR87_RS17190 0.14 -0.7 202,172 + ABZR87_RS17190 0.26 +0.7 202,172 + ABZR87_RS17190 0.26 +0.1 202,172 + ABZR87_RS17190 0.26 -0.7 202,172 + ABZR87_RS17190 0.26 +0.2 202,172 + ABZR87_RS17190 0.26 +0.5 202,173 - ABZR87_RS17190 0.26 -0.2 202,173 - ABZR87_RS17190 0.26 -0.3 202,173 - ABZR87_RS17190 0.26 +0.4 202,173 - ABZR87_RS17190 0.26 +0.9 202,181 - ABZR87_RS17190 0.27 -1.3 202,343 + ABZR87_RS17190 0.40 +0.5 202,344 - ABZR87_RS17190 0.40 -1.7 202,370 + ABZR87_RS17190 0.42 +0.0 202,370 + ABZR87_RS17190 0.42 -0.3 202,370 + ABZR87_RS17190 0.42 -0.2 202,371 - ABZR87_RS17190 0.42 -1.0 202,374 - ABZR87_RS17190 0.42 +1.9 202,535 + ABZR87_RS17190 0.55 -0.7 202,535 + ABZR87_RS17190 0.55 +1.8 202,535 + ABZR87_RS17190 0.55 -1.4 202,535 + ABZR87_RS17190 0.55 +0.8 202,535 + ABZR87_RS17190 0.55 -0.2 202,535 + ABZR87_RS17190 0.55 -1.1 202,535 + ABZR87_RS17190 0.55 +0.2 202,535 + ABZR87_RS17190 0.55 +0.3 202,535 + ABZR87_RS17190 0.55 -0.1 202,535 + ABZR87_RS17190 0.55 -0.2 202,535 + ABZR87_RS17190 0.55 -0.1 202,535 + ABZR87_RS17190 0.55 -0.5 202,535 + ABZR87_RS17190 0.55 +0.8 202,535 + ABZR87_RS17190 0.55 -0.1 202,536 - ABZR87_RS17190 0.55 +0.9 202,536 - ABZR87_RS17190 0.55 -0.2 202,536 - ABZR87_RS17190 0.55 +0.8 202,610 + ABZR87_RS17190 0.61 +0.6 202,610 + ABZR87_RS17190 0.61 +0.5 202,611 - ABZR87_RS17190 0.61 +0.0 202,622 + ABZR87_RS17190 0.62 +0.8 202,622 + ABZR87_RS17190 0.62 -0.5 202,623 - ABZR87_RS17190 0.62 -0.0
Or see this region's nucleotide sequence