Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS11390

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
2,412,736	+		ABZR87_RS11380	0.63	-0.9
2,412,737	-		ABZR87_RS11380	0.63	+0.2
2,412,776	+		ABZR87_RS11380	0.69	-1.0
2,412,777	-		ABZR87_RS11380	0.69	-0.8
2,412,861	-		ABZR87_RS11380	0.80	+0.4
2,412,978	-				+0.1
2,412,997	+				+0.5
2,413,044	+				-3.0
2,413,045	-				-1.5
2,413,045	-				-0.1
2,413,045	-				+0.6
2,413,045	-				+0.7
2,413,045	-				+0.7
2,413,153	+				+0.7
2,413,153	+				+0.4
2,413,153	+				+1.1
2,413,154	-				+0.1
2,413,154	-				-0.8
2,413,154	-				+0.9
2,413,172	+				-0.6
2,413,172	-				+0.4
2,413,173	-				+1.2
2,413,219	+		ABZR87_RS11385	0.16	-0.1
2,413,219	+		ABZR87_RS11385	0.16	+0.6
2,413,219	+		ABZR87_RS11385	0.16	-1.2
2,413,219	+		ABZR87_RS11385	0.16	-1.3
2,413,219	+		ABZR87_RS11385	0.16	+0.3
2,413,219	+		ABZR87_RS11385	0.16	-0.2
2,413,220	-		ABZR87_RS11385	0.16	+1.4
2,413,220	-		ABZR87_RS11385	0.16	+0.9
2,413,235	+		ABZR87_RS11385	0.19	+1.2
2,413,237	+		ABZR87_RS11385	0.20	+0.6
2,413,237	+		ABZR87_RS11385	0.20	+0.2
2,413,237	+		ABZR87_RS11385	0.20	-0.1
2,413,237	+		ABZR87_RS11385	0.20	+0.5
2,413,237	+		ABZR87_RS11385	0.20	-0.3
2,413,237	+		ABZR87_RS11385	0.20	+1.0
2,413,237	+		ABZR87_RS11385	0.20	+0.1
2,413,238	-		ABZR87_RS11385	0.20	+0.8
2,413,238	-		ABZR87_RS11385	0.20	-0.8
2,413,238	-		ABZR87_RS11385	0.20	+0.4
2,413,238	-		ABZR87_RS11385	0.20	-0.2
2,413,238	-		ABZR87_RS11385	0.20	-0.9
2,413,238	-		ABZR87_RS11385	0.20	+0.2
2,413,340	-		ABZR87_RS11385	0.44	+0.0
2,413,340	-		ABZR87_RS11385	0.44	-0.3
2,413,365	+		ABZR87_RS11385	0.50	+0.6
2,413,365	+		ABZR87_RS11385	0.50	+0.3
2,413,365	+		ABZR87_RS11385	0.50	-0.2
2,413,365	+		ABZR87_RS11385	0.50	-0.0
2,413,365	+		ABZR87_RS11385	0.50	+0.9
2,413,366	-		ABZR87_RS11385	0.50	+0.6
2,413,366	-		ABZR87_RS11385	0.50	-0.1
2,413,381	+		ABZR87_RS11385	0.54	-3.3
2,413,381	+		ABZR87_RS11385	0.54	+0.9
2,413,382	-		ABZR87_RS11385	0.54	+2.9
2,413,382	-		ABZR87_RS11385	0.54	-0.6
2,413,382	-		ABZR87_RS11385	0.54	-0.6
2,413,382	-		ABZR87_RS11385	0.54	-0.4
2,413,382	-		ABZR87_RS11385	0.54	+0.8
2,413,441	+		ABZR87_RS11385	0.68	-2.1
2,413,442	-		ABZR87_RS11385	0.68	+0.1
2,413,442	-		ABZR87_RS11385	0.68	-0.1
2,413,442	-		ABZR87_RS11385	0.68	+1.2
2,413,653	+				-0.5
2,413,654	-				+1.4
2,413,658	+				+0.6
2,413,659	-				+0.2
2,413,797	+				+0.6
2,413,797	+				+0.9
2,413,797	+				-0.2
2,413,798	-				-0.5
2,413,827	+				-0.6
2,413,827	+				-0.3
2,413,964	-		ABZR87_RS11390	0.15	-1.7
2,414,190	+		ABZR87_RS11390	0.29	-1.5
2,414,190	+		ABZR87_RS11390	0.29	-1.6
2,414,190	+		ABZR87_RS11390	0.29	+1.9
2,414,191	-		ABZR87_RS11390	0.29	-0.9
2,414,297	+		ABZR87_RS11390	0.35	-1.8
2,414,298	-		ABZR87_RS11390	0.35	-0.7
2,414,298	-		ABZR87_RS11390	0.35	-1.9
2,414,370	+		ABZR87_RS11390	0.39	-0.7
2,414,370	+		ABZR87_RS11390	0.39	-2.6
2,414,371	-		ABZR87_RS11390	0.39	-0.6
2,414,371	-		ABZR87_RS11390	0.39	-0.6
2,414,427	+		ABZR87_RS11390	0.42	+1.1
2,414,427	+		ABZR87_RS11390	0.42	-1.3
2,414,427	+		ABZR87_RS11390	0.42	-1.8
2,414,428	-		ABZR87_RS11390	0.42	-1.2
2,414,428	-		ABZR87_RS11390	0.42	-0.1
2,414,511	+		ABZR87_RS11390	0.47	-0.7
2,414,511	+		ABZR87_RS11390	0.47	-2.0
2,414,511	+		ABZR87_RS11390	0.47	+0.4
2,414,511	+		ABZR87_RS11390	0.47	-1.2
2,414,604	+		ABZR87_RS11390	0.52	+0.2
2,414,604	+		ABZR87_RS11390	0.52	-0.7
2,414,605	-		ABZR87_RS11390	0.53	+2.7
2,414,605	-		ABZR87_RS11390	0.53	-1.9
2,414,605	-		ABZR87_RS11390	0.53	+0.1
2,414,643	+		ABZR87_RS11390	0.55	-1.1
2,414,643	+		ABZR87_RS11390	0.55	-2.2
2,414,643	+		ABZR87_RS11390	0.55	+0.3
2,414,643	+		ABZR87_RS11390	0.55	-0.6
2,414,643	+		ABZR87_RS11390	0.55	-0.8
2,414,644	-		ABZR87_RS11390	0.55	+0.9
2,415,010	-		ABZR87_RS11390	0.76	+0.2
2,415,152	+		ABZR87_RS11390	0.84	-1.1
2,415,152	+		ABZR87_RS11390	0.84	-0.3
2,415,153	-		ABZR87_RS11390	0.84	-1.3
2,415,153	-		ABZR87_RS11390	0.84	+0.2
2,415,262	+				-2.4
2,415,263	-				-1.8
2,415,433	+				-1.1
2,415,434	-				+2.5
2,415,434	-				+1.1
2,415,434	-				-0.1
2,415,434	-				-1.8
2,415,434	-				+3.0
2,415,725	+				-0.7
2,415,725	+				+0.4
2,415,744	+				+2.1
2,415,882	+				-1.2
2,415,892	+				-0.6
2,415,893	-				+0.7
2,415,893	-				-0.9
2,415,894	+				-0.8
2,415,894	+				-1.3
2,415,894	+				-0.7
2,415,895	-				+1.4
2,415,895	-				+0.2
2,416,024	+		ABZR87_RS11395	0.29	-0.8
2,416,024	+		ABZR87_RS11395	0.29	+1.5
2,416,025	-		ABZR87_RS11395	0.29	-0.4
2,416,025	-		ABZR87_RS11395	0.29	+0.1
2,416,025	-		ABZR87_RS11395	0.29	+0.4
2,416,025	-		ABZR87_RS11395	0.29	+2.4
2,416,189	+		ABZR87_RS11395	0.64	-0.4
2,416,190	-		ABZR87_RS11395	0.64	+1.2
2,416,190	-		ABZR87_RS11395	0.64	-0.3
2,416,247	-		ABZR87_RS11395	0.77	+0.6
2,416,249	-		ABZR87_RS11395	0.77	-0.7
2,416,252	+		ABZR87_RS11395	0.78	+1.0
2,416,252	+		ABZR87_RS11395	0.78	-0.6
2,416,252	+		ABZR87_RS11395	0.78	+1.7
2,416,253	-		ABZR87_RS11395	0.78	+0.5
2,416,253	-		ABZR87_RS11395	0.78	+1.1
2,416,253	-		ABZR87_RS11395	0.78	+1.5
2,416,253	-		ABZR87_RS11395	0.78	+2.5
2,416,253	-		ABZR87_RS11395	0.78	-0.8