Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS07740 and ABZR87_RS07745 are separated by 86 nucleotides ABZR87_RS07745 and ABZR87_RS07750 overlap by 4 nucleotides ABZR87_RS07750 and ABZR87_RS07755 are separated by 176 nucleotides
ABZR87_RS07740: ABZR87_RS07740 - glycine--tRNA ligase subunit beta, at 1,640,063 to 1,642,156
_RS07740
ABZR87_RS07745: ABZR87_RS07745 - hypothetical protein, at 1,642,243 to 1,642,902
_RS07745
ABZR87_RS07750: ABZR87_RS07750 - glycine--tRNA ligase subunit alpha, at 1,642,899 to 1,643,885
_RS07750
ABZR87_RS07755: ABZR87_RS07755 - apolipoprotein N-acyltransferase, at 1,644,062 to 1,645,573
_RS07755
Position (kb) 1642
1643
1644 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1642.219 kb on - strand at 1642.434 kb on - strand, within ABZR87_RS07745 at 1642.434 kb on - strand, within ABZR87_RS07745 at 1642.434 kb on - strand, within ABZR87_RS07745 at 1642.434 kb on - strand, within ABZR87_RS07745 at 1642.434 kb on - strand, within ABZR87_RS07745 at 1642.584 kb on - strand, within ABZR87_RS07745 at 1642.584 kb on - strand, within ABZR87_RS07745 at 1642.584 kb on - strand, within ABZR87_RS07745 at 1642.584 kb on - strand, within ABZR87_RS07745 at 1642.584 kb on - strand, within ABZR87_RS07745 at 1644.206 kb on - strand at 1644.720 kb on + strand, within ABZR87_RS07755 at 1644.720 kb on + strand, within ABZR87_RS07755
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,642,219 - -1.6 1,642,434 - ABZR87_RS07745 0.29 -1.0 1,642,434 - ABZR87_RS07745 0.29 -2.0 1,642,434 - ABZR87_RS07745 0.29 +0.5 1,642,434 - ABZR87_RS07745 0.29 -1.0 1,642,434 - ABZR87_RS07745 0.29 -0.0 1,642,584 - ABZR87_RS07745 0.52 -0.3 1,642,584 - ABZR87_RS07745 0.52 +0.6 1,642,584 - ABZR87_RS07745 0.52 +0.4 1,642,584 - ABZR87_RS07745 0.52 +1.2 1,642,584 - ABZR87_RS07745 0.52 -0.5 1,644,206 - +2.0 1,644,720 + ABZR87_RS07755 0.44 +3.0 1,644,720 + ABZR87_RS07755 0.44 +3.0
Or see this region's nucleotide sequence