Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06475

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06465 and ABZR87_RS06470 are separated by 86 nucleotidesABZR87_RS06470 and ABZR87_RS06475 are separated by 56 nucleotidesABZR87_RS06475 and ABZR87_RS06480 are separated by 3 nucleotides ABZR87_RS06465: ABZR87_RS06465 - ABC transporter substrate-binding protein, at 1,376,850 to 1,378,013 _RS06465 ABZR87_RS06470: ABZR87_RS06470 - enoyl-CoA hydratase/isomerase family protein, at 1,378,100 to 1,378,918 _RS06470 ABZR87_RS06475: ABZR87_RS06475 - PhaM family polyhydroxyalkanoate granule multifunctional regulatory protein, at 1,378,975 to 1,379,865 _RS06475 ABZR87_RS06480: ABZR87_RS06480 - patatin-like phospholipase family protein, at 1,379,869 to 1,381,053 _RS06480 Position (kb) 1378 1379 1380Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1378.073 kb on + strandat 1378.073 kb on + strandat 1378.074 kb on - strandat 1378.074 kb on - strandat 1378.087 kb on + strandat 1378.087 kb on + strandat 1378.087 kb on + strandat 1378.088 kb on - strandat 1378.088 kb on - strandat 1378.088 kb on - strandat 1378.088 kb on - strandat 1378.130 kb on + strandat 1378.173 kb on + strandat 1378.409 kb on + strand, within ABZR87_RS06470at 1378.409 kb on + strand, within ABZR87_RS06470at 1378.410 kb on - strand, within ABZR87_RS06470at 1378.410 kb on - strand, within ABZR87_RS06470at 1378.498 kb on + strand, within ABZR87_RS06470at 1378.498 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.619 kb on + strand, within ABZR87_RS06470at 1378.619 kb on + strand, within ABZR87_RS06470at 1378.619 kb on + strand, within ABZR87_RS06470at 1378.619 kb on + strand, within ABZR87_RS06470at 1378.619 kb on + strand, within ABZR87_RS06470at 1378.620 kb on - strand, within ABZR87_RS06470at 1378.620 kb on - strand, within ABZR87_RS06470at 1378.620 kb on - strand, within ABZR87_RS06470at 1378.620 kb on - strand, within ABZR87_RS06470at 1378.620 kb on - strand, within ABZR87_RS06470at 1378.772 kb on + strand, within ABZR87_RS06470at 1378.772 kb on + strand, within ABZR87_RS06470at 1378.772 kb on + strand, within ABZR87_RS06470at 1378.773 kb on - strand, within ABZR87_RS06470at 1378.773 kb on - strand, within ABZR87_RS06470at 1378.816 kb on + strand, within ABZR87_RS06470at 1378.817 kb on - strand, within ABZR87_RS06470at 1378.964 kb on + strandat 1378.964 kb on + strandat 1378.965 kb on - strandat 1379.697 kb on + strand, within ABZR87_RS06475at 1379.698 kb on - strand, within ABZR87_RS06475at 1379.698 kb on - strand, within ABZR87_RS06475at 1379.706 kb on + strand, within ABZR87_RS06475at 1379.707 kb on - strand, within ABZR87_RS06475at 1379.707 kb on - strand, within ABZR87_RS06475at 1379.707 kb on - strand, within ABZR87_RS06475at 1379.707 kb on - strand, within ABZR87_RS06475at 1379.923 kb on + strandat 1379.968 kb on + strandat 1380.124 kb on + strand, within ABZR87_RS06480at 1380.228 kb on + strand, within ABZR87_RS06480at 1380.228 kb on + strand, within ABZR87_RS06480at 1380.228 kb on + strand, within ABZR87_RS06480at 1380.228 kb on + strand, within ABZR87_RS06480at 1380.228 kb on + strand, within ABZR87_RS06480at 1380.228 kb on + strand, within ABZR87_RS06480at 1380.229 kb on - strand, within ABZR87_RS06480at 1380.229 kb on - strand, within ABZR87_RS06480at 1380.331 kb on + strand, within ABZR87_RS06480at 1380.331 kb on + strand, within ABZR87_RS06480at 1380.331 kb on + strand, within ABZR87_RS06480at 1380.331 kb on + strand, within ABZR87_RS06480at 1380.332 kb on - strand, within ABZR87_RS06480at 1380.332 kb on - strand, within ABZR87_RS06480at 1380.358 kb on + strand, within ABZR87_RS06480at 1380.358 kb on + strand, within ABZR87_RS06480at 1380.358 kb on + strand, within ABZR87_RS06480at 1380.359 kb on - strand, within ABZR87_RS06480at 1380.359 kb on - strand, within ABZR87_RS06480at 1380.359 kb on - strand, within ABZR87_RS06480at 1380.359 kb on - strand, within ABZR87_RS06480at 1380.359 kb on - strand, within ABZR87_RS06480at 1380.359 kb on - strand, within ABZR87_RS06480at 1380.359 kb on - strand, within ABZR87_RS06480at 1380.616 kb on + strand, within ABZR87_RS06480at 1380.617 kb on - strand, within ABZR87_RS06480at 1380.617 kb on - strand, within ABZR87_RS06480at 1380.617 kb on - strand, within ABZR87_RS06480

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,378,073 + -2.1
1,378,073 + +0.2
1,378,074 - +0.7
1,378,074 - +0.7
1,378,087 + +1.9
1,378,087 + -0.6
1,378,087 + -0.7
1,378,088 - -0.7
1,378,088 - -1.7
1,378,088 - +4.6
1,378,088 - -0.1
1,378,130 + -0.6
1,378,173 + +1.4
1,378,409 + ABZR87_RS06470 0.38 -1.5
1,378,409 + ABZR87_RS06470 0.38 -0.1
1,378,410 - ABZR87_RS06470 0.38 +0.3
1,378,410 - ABZR87_RS06470 0.38 -0.5
1,378,498 + ABZR87_RS06470 0.49 +0.6
1,378,498 + ABZR87_RS06470 0.49 -0.8
1,378,616 + ABZR87_RS06470 0.63 -0.6
1,378,616 + ABZR87_RS06470 0.63 +0.8
1,378,616 + ABZR87_RS06470 0.63 +0.4
1,378,616 + ABZR87_RS06470 0.63 +0.9
1,378,616 + ABZR87_RS06470 0.63 -0.1
1,378,616 + ABZR87_RS06470 0.63 -0.7
1,378,616 - ABZR87_RS06470 0.63 +0.4
1,378,617 - ABZR87_RS06470 0.63 +1.4
1,378,617 - ABZR87_RS06470 0.63 -0.1
1,378,617 - ABZR87_RS06470 0.63 +1.7
1,378,617 - ABZR87_RS06470 0.63 -0.5
1,378,617 - ABZR87_RS06470 0.63 -0.5
1,378,617 - ABZR87_RS06470 0.63 -1.3
1,378,617 - ABZR87_RS06470 0.63 -0.3
1,378,617 - ABZR87_RS06470 0.63 +1.2
1,378,619 + ABZR87_RS06470 0.63 -0.1
1,378,619 + ABZR87_RS06470 0.63 +0.4
1,378,619 + ABZR87_RS06470 0.63 +1.0
1,378,619 + ABZR87_RS06470 0.63 -1.0
1,378,619 + ABZR87_RS06470 0.63 +0.4
1,378,620 - ABZR87_RS06470 0.63 +0.4
1,378,620 - ABZR87_RS06470 0.63 -1.3
1,378,620 - ABZR87_RS06470 0.63 +0.4
1,378,620 - ABZR87_RS06470 0.63 -1.1
1,378,620 - ABZR87_RS06470 0.63 +1.0
1,378,772 + ABZR87_RS06470 0.82 +0.1
1,378,772 + ABZR87_RS06470 0.82 +2.0
1,378,772 + ABZR87_RS06470 0.82 -0.4
1,378,773 - ABZR87_RS06470 0.82 -2.0
1,378,773 - ABZR87_RS06470 0.82 -0.4
1,378,816 + ABZR87_RS06470 0.87 +0.7
1,378,817 - ABZR87_RS06470 0.88 -0.3
1,378,964 + +0.2
1,378,964 + -0.5
1,378,965 - -1.2
1,379,697 + ABZR87_RS06475 0.81 -1.8
1,379,698 - ABZR87_RS06475 0.81 -0.2
1,379,698 - ABZR87_RS06475 0.81 -0.8
1,379,706 + ABZR87_RS06475 0.82 -0.9
1,379,707 - ABZR87_RS06475 0.82 -0.3
1,379,707 - ABZR87_RS06475 0.82 +0.6
1,379,707 - ABZR87_RS06475 0.82 -0.0
1,379,707 - ABZR87_RS06475 0.82 -0.8
1,379,923 + -0.9
1,379,968 + -0.5
1,380,124 + ABZR87_RS06480 0.22 -0.2
1,380,228 + ABZR87_RS06480 0.30 -0.3
1,380,228 + ABZR87_RS06480 0.30 -0.6
1,380,228 + ABZR87_RS06480 0.30 -0.9
1,380,228 + ABZR87_RS06480 0.30 -0.4
1,380,228 + ABZR87_RS06480 0.30 -0.4
1,380,228 + ABZR87_RS06480 0.30 -0.0
1,380,229 - ABZR87_RS06480 0.30 +0.5
1,380,229 - ABZR87_RS06480 0.30 +0.6
1,380,331 + ABZR87_RS06480 0.39 +1.4
1,380,331 + ABZR87_RS06480 0.39 -0.9
1,380,331 + ABZR87_RS06480 0.39 -0.1
1,380,331 + ABZR87_RS06480 0.39 -1.0
1,380,332 - ABZR87_RS06480 0.39 +0.7
1,380,332 - ABZR87_RS06480 0.39 +0.5
1,380,358 + ABZR87_RS06480 0.41 +0.9
1,380,358 + ABZR87_RS06480 0.41 -2.5
1,380,358 + ABZR87_RS06480 0.41 -0.6
1,380,359 - ABZR87_RS06480 0.41 -0.3
1,380,359 - ABZR87_RS06480 0.41 -0.1
1,380,359 - ABZR87_RS06480 0.41 -1.0
1,380,359 - ABZR87_RS06480 0.41 -0.0
1,380,359 - ABZR87_RS06480 0.41 +0.2
1,380,359 - ABZR87_RS06480 0.41 +2.0
1,380,359 - ABZR87_RS06480 0.41 -0.6
1,380,616 + ABZR87_RS06480 0.63 -1.0
1,380,617 - ABZR87_RS06480 0.63 -1.9
1,380,617 - ABZR87_RS06480 0.63 +1.3
1,380,617 - ABZR87_RS06480 0.63 -1.1

Or see this region's nucleotide sequence