Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05690

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,206,962	+		ABZR87_RS05685	0.20	-0.2
1,206,963	-		ABZR87_RS05685	0.20	+0.8
1,206,963	-		ABZR87_RS05685	0.20	+0.2
1,207,283	+		ABZR87_RS05685	0.48	-0.3
1,207,283	+		ABZR87_RS05685	0.48	-0.3
1,207,283	+		ABZR87_RS05685	0.48	+0.1
1,207,283	+		ABZR87_RS05685	0.48	+1.2
1,207,283	+		ABZR87_RS05685	0.48	+0.6
1,207,284	-		ABZR87_RS05685	0.48	+0.7
1,207,284	-		ABZR87_RS05685	0.48	+0.7
1,207,284	-		ABZR87_RS05685	0.48	-1.7
1,207,284	-		ABZR87_RS05685	0.48	+0.6
1,207,307	+		ABZR87_RS05685	0.50	+0.0
1,207,307	+		ABZR87_RS05685	0.50	-2.1
1,207,308	-		ABZR87_RS05685	0.50	+0.1
1,207,308	-		ABZR87_RS05685	0.50	+1.2
1,207,466	+		ABZR87_RS05685	0.63	-0.1
1,207,466	+		ABZR87_RS05685	0.63	-2.0
1,207,467	-		ABZR87_RS05685	0.63	+0.6
1,207,467	-		ABZR87_RS05685	0.63	-0.5
1,207,467	-		ABZR87_RS05685	0.63	+0.4
1,207,467	-		ABZR87_RS05685	0.63	+0.9
1,207,559	+		ABZR87_RS05685	0.71	+0.0
1,207,559	+		ABZR87_RS05685	0.71	+0.1
1,207,559	+		ABZR87_RS05685	0.71	-2.4
1,207,559	+		ABZR87_RS05685	0.71	-0.4
1,207,559	+		ABZR87_RS05685	0.71	+0.2
1,207,559	+		ABZR87_RS05685	0.71	-0.0
1,207,559	+		ABZR87_RS05685	0.71	+0.0
1,207,559	+		ABZR87_RS05685	0.71	-0.4
1,207,560	-		ABZR87_RS05685	0.71	-1.7
1,207,560	-		ABZR87_RS05685	0.71	+0.2
1,207,560	-		ABZR87_RS05685	0.71	-0.4
1,207,560	-		ABZR87_RS05685	0.71	+0.3
1,207,560	-		ABZR87_RS05685	0.71	-0.4
1,207,580	-		ABZR87_RS05685	0.73	-0.2
1,207,580	-		ABZR87_RS05685	0.73	+0.7
1,207,580	-		ABZR87_RS05685	0.73	+1.4
1,207,661	+		ABZR87_RS05685	0.80	-0.7
1,207,661	+		ABZR87_RS05685	0.80	+0.7
1,207,661	+		ABZR87_RS05685	0.80	-1.0
1,207,661	+		ABZR87_RS05685	0.80	+0.0
1,207,662	-		ABZR87_RS05685	0.80	+0.4
1,207,662	-		ABZR87_RS05685	0.80	-0.4
1,207,662	-		ABZR87_RS05685	0.80	-1.5
1,207,662	-		ABZR87_RS05685	0.80	-0.5
1,207,662	-		ABZR87_RS05685	0.80	-0.9
1,207,662	-		ABZR87_RS05685	0.80	+0.2
1,207,662	-		ABZR87_RS05685	0.80	-0.1
1,207,757	+		ABZR87_RS05685	0.88	+0.5
1,207,757	+		ABZR87_RS05685	0.88	-0.3
1,207,757	+		ABZR87_RS05685	0.88	+0.2
1,207,758	-		ABZR87_RS05685	0.88	+0.0
1,207,844	-				+2.7
1,207,878	-				-1.2
1,207,878	-				-0.1
1,207,878	-				-1.6
1,207,878	-				+2.9
1,207,904	+				+0.7
1,207,904	+				+0.2
1,207,904	+				-0.2
1,207,904	+				-0.5
1,207,904	+				-3.0
1,207,905	-				+0.7
1,207,905	-				+2.4
1,207,905	-				+1.1
1,207,905	-				-1.0
1,207,905	-				-2.6
1,207,978	+				+0.6
1,207,978	+				+0.8
1,207,978	+				+0.6
1,208,054	+				+0.4
1,208,119	+		ABZR87_RS05690	0.12	-1.1
1,208,119	+		ABZR87_RS05690	0.12	+0.5
1,208,141	+		ABZR87_RS05690	0.14	+0.1
1,208,141	+		ABZR87_RS05690	0.14	-0.3
1,208,141	+		ABZR87_RS05690	0.14	-1.2
1,208,141	+		ABZR87_RS05690	0.14	+1.1
1,208,142	-		ABZR87_RS05690	0.14	+0.9
1,208,142	-		ABZR87_RS05690	0.14	+1.7
1,208,242	+		ABZR87_RS05690	0.19	+0.2
1,208,243	-		ABZR87_RS05690	0.19	+4.5
1,208,243	-		ABZR87_RS05690	0.19	-2.5
1,208,300	+		ABZR87_RS05690	0.23	+0.5
1,208,307	+		ABZR87_RS05690	0.23	-0.8
1,208,308	-		ABZR87_RS05690	0.23	+1.7
1,208,624	+		ABZR87_RS05690	0.41	+0.4
1,208,625	-		ABZR87_RS05690	0.41	-0.1
1,208,631	+		ABZR87_RS05690	0.42	+0.5
1,208,631	+		ABZR87_RS05690	0.42	-1.2
1,208,631	+		ABZR87_RS05690	0.42	-1.1
1,208,631	+		ABZR87_RS05690	0.42	-0.1
1,208,632	-		ABZR87_RS05690	0.42	-0.3
1,208,632	-		ABZR87_RS05690	0.42	+0.3
1,208,655	+		ABZR87_RS05690	0.43	+0.2
1,208,655	+		ABZR87_RS05690	0.43	-0.7
1,208,656	-		ABZR87_RS05690	0.43	+0.2
1,208,656	-		ABZR87_RS05690	0.43	+1.1
1,208,656	-		ABZR87_RS05690	0.43	-0.3
1,208,666	+		ABZR87_RS05690	0.44	-0.2
1,208,717	+		ABZR87_RS05690	0.47	+0.4
1,208,727	+		ABZR87_RS05690	0.47	+2.7
1,208,727	+		ABZR87_RS05690	0.47	-1.4
1,208,727	+		ABZR87_RS05690	0.47	-0.0
1,208,728	-		ABZR87_RS05690	0.47	+0.3
1,208,987	-		ABZR87_RS05690	0.62	-2.1
1,209,339	+		ABZR87_RS05690	0.82	-0.6
1,209,339	+		ABZR87_RS05690	0.82	-0.9
1,209,339	+		ABZR87_RS05690	0.82	+1.4
1,209,339	+		ABZR87_RS05690	0.82	-0.1
1,209,340	-		ABZR87_RS05690	0.82	-1.3
1,209,360	+		ABZR87_RS05690	0.84	+0.8
1,209,361	-		ABZR87_RS05690	0.84	-0.1
1,209,361	-		ABZR87_RS05690	0.84	+1.4
1,209,373	+		ABZR87_RS05690	0.84	+0.7
1,209,374	-		ABZR87_RS05690	0.84	-1.2
1,209,374	-		ABZR87_RS05690	0.84	+0.2
1,209,436	+		ABZR87_RS05690	0.88	+0.0
1,209,437	-		ABZR87_RS05690	0.88	-0.2
1,209,437	-		ABZR87_RS05690	0.88	+0.2
1,209,524	-				+0.1
1,209,598	+				-0.3
1,209,598	+				+0.3
1,209,598	+				-0.9
1,209,598	+				-0.2
1,209,598	+				-0.4
1,209,599	-				-1.4
1,209,599	-				+0.4
1,209,626	-				-1.1
1,209,642	+				+0.8
1,209,642	+				-0.7
1,209,643	-				-0.4
1,209,643	-				-0.6
1,209,700	+				+2.9
1,209,709	+				+0.1
1,209,710	-				+0.1
1,209,710	-				-3.5
1,209,710	-				-0.4
1,209,966	+				-0.5
1,209,966	+				-0.9
1,209,967	-				-0.6
1,209,967	-				-0.6
1,209,967	-				-0.6
1,209,967	-				-1.3
1,210,592	+		ABZR87_RS05695	0.69	-1.0
1,210,592	+		ABZR87_RS05695	0.69	+0.2
1,210,593	-		ABZR87_RS05695	0.69	-0.9
1,210,593	-		ABZR87_RS05695	0.69	-0.2
1,210,593	-		ABZR87_RS05695	0.69	+0.9